Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0379 ATGGGCTGCCACGCTGCCTCCTGGCTATGCGCGCCGATGCCCACAGCCACAACCACCACCGGGTCATCCAAATTCTACAAGTCAACTACCATCTTCTGCTGCATCAACAGTCCTGCAGATTCAACGCATCCCTCGCCGTCGGTATCGACTGGCTCCTCCAGCCGCCGGTGGTACAATCCCCTGAAGAAAAGGCCGTTGGATCAGCCACCTGAGATTGTGCGCCATTGGATCGATTCCAATCATCCGTTCCCCTCGCAGGAAACATTTACAGTTGTGTCATATAACATATTGGGGGATAGAAATGCTTTCAAGCACAGAGATCTCTACTCCAATGTTCCCTTCTCTTACATGAAATGGGACCACCGAAGGAGGGTTATATGCAATGAAATCATTGGACGGAACCCTGATATAGTCTGTCTGCAAGAGGTGGACAAGTATTTTGATCTTGTAAGCATTATGGAGAAAGAGGGATATGCTGGTTCTTATAAGAGACGCACTGGAGACACTGTTGATGGCTGTGCTATGTTTTGGAAAGCTGAGAAGTTTCGGTTATTAGAGGGAGAGTGCATTGAATTTAAGCAATATGGTCTTCGTGATAATGTTGCTCAACTTTCTCTTTTCGAGATGTGTGAAGATGAATCAAGAAAGCTGTTGGTTGGTAACATACATGTGCTGTATAACCCAAGCCGAGGGGATGTTAAATTAGGTCAAATCCGTTTTTTATCATCAAGGGCACATATCCTCTCAGAGAAATGGGGTAATGTCCCTGTTGTTCTTGCTGGTGATTTCAATAGTACTCCTCAGAGTGCAATGTACCAATTCTTGTCATCATCTGAGCTAAATATCATGTTATATGACAGAAGAGAGCTTTCTGGTCAGAGAAATTGTCATCCTGCTCAAGTTTTTGATGTTGAAAGAGAAATATCAAGTTCCTTTATTTTGATGGACAGGTTTTTGAAAGGTTGTTGGACAGATGAGGAGGTTAAAGTGGCAACTGGCAATGCTGATTGCCATGTTGTTGTGCATCCTTTGAAGCTTAAGAGCTCCTATGCCACAGTGAAGAGTTCGACAAGAACAAGGGGCTTCAATGGTGAACCTTTAGCTACCTCCTACCACTCAAAGTTCCTTGGAACTGTTGACTATTTGTGGTACTCAGATGGTGTTGTACCTACCAGAGTTCTGGATACTCTTCCAGTTGATATTCTGCGGGGATTGGGTGGCCTTCCATGCAGGGAAGTGGGAAGTGATCACTTGGCTCTGATTTCTGAGTTTGCCTTCGCACAAGGCACAGAAGAAGGAAACAATATGACATCTATGGTAACCTAA 1326 0.4472 MGCHAASWLCAPMPTATTTTGSSKFYKSTTIFCCINSPADSTHPSPSVSTGSSSRRWYNPLKKRPLDQPPEIVRHWIDSNHPFPSQETFTVVSYNILGDRNAFKHRDLYSNVPFSYMKWDHRRRVICNEIIGRNPDIVCLQEVDKYFDLVSIMEKEGYAGSYKRRTGDTVDGCAMFWKAEKFRLLEGECIEFKQYGLRDNVAQLSLFEMCEDESRKLLVGNIHVLYNPSRGDVKLGQIRFLSSRAHILSEKWGNVPVVLAGDFNSTPQSAMYQFLSSSELNIMLYDRRELSGQRNCHPAQVFDVEREISSSFILMDRFLKGCWTDEEVKVATGNADCHVVVHPLKLKSSYATVKSSTRTRGFNGEPLATSYHSKFLGTVDYLWYSDGVVPTRVLDTLPVDILRGLGGLPCREVGSDHLALISEFAFAQGTEEGNNMTSMVT* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0379 441 MobiDBLite consensus disorder prediction 40 63 - -
Vvi17g0379 441 Pfam Endonuclease/Exonuclease/phosphatase family 92 417 IPR005135 GO:0003824
Vvi17g0379 441 Gene3D Endonuclease/exonuclease/phosphatase 64 439 IPR036691 -
Vvi17g0379 441 SUPERFAMILY DNase I-like 69 427 IPR036691 -
Vvi17g0379 441 MobiDBLite consensus disorder prediction 40 57 - -
Vvi17g0379 441 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 50 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0379 Vvi-Chr17 4069034 4077960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0379 86 277 EF-hand Containing Proteins AT5G54130 27.273 1.15e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0379 - - vvi:100244123 904.049