Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0378 ATGTTAATGACGGTCTCTGCTGCAGCACCTGGAAAAGGAAGCGGGGTGTTGGAGAGGCCAACAATAGAGAGAATAATGCCAGGTCGGGAGTCAGAATTTGACCTGAGGAAATCAAGGAAAATGTCCCCACCTTATCGAGTACTGCTGCATAACGACAACTACAATAAGCGAGAGTATGTTGTTCAAGTGCTGATGAAGGTTATCCCTGGAATGACACTTGACAATGCGGTTAATATCATGCAAGAGGCACACCATAATGGCATGTCAGTGGTTATCATTTGTGCTCAAGTCGATGCAGAGGATCACTGCATGCAGCTGAGGGGAAATGGTCTTCTAAGTTCGATTGAGCCTGCAAGCGGTGGGTGTTAA 369 0.4661 MLMTVSAAAPGKGSGVLERPTIERIMPGRESEFDLRKSRKMSPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASGGC* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0378 122 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 11 122 IPR022935 GO:0006508
Vvi17g0378 122 FunFam ATP-dependent Clp protease adapter protein CLPS1, chloroplastic 39 117 - -
Vvi17g0378 122 SUPERFAMILY ClpS-like 39 117 IPR014719 -
Vvi17g0378 122 Pfam ATP-dependent Clp protease adaptor protein ClpS 42 108 IPR003769 GO:0030163
Vvi17g0378 122 Gene3D - 39 117 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0378 Vvi-Chr17 4063142 4067738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0378 K06891 - vvi:100247572 248.054