Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0377 ATGCTTATTGGGTTGATCCTAAGAGCATCCAATGCTACTCGCGGAACCATCATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATGCTTATTGGTTGATCTTAAAGAGCATCCAATGCTACTCGCGGAACCATCATCTAACACTCAGCAACAAAGAGAAAGGACAGCCCAGCTCATGTTTGAAAAGTATGAAGTTCCTGCATTATTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCGTCAGGACGTGCTACGTCATTAGTTGTGGACAGTGGTGGAGGATCAACTACTGTTGCCCCTGTCCATGATGGTTATGTTCTTCAAAAGGCTGTGGCCTCTTCTCCTATTGGAGGAGAATTTCTTACTGAATGCATGATGAAAAGCTTGGAAAGTAAAGGCATTTCGATAAAGCCCAGATATTCTTTTAAAAGAAAGGAAACACGTCCAGGAGACTTTCAGACTGTTGATGTTGATTTTCCAAATACAACAGAAAGTTATAAGCTGTACTCCCAGAGGGTTATTGCTAGTGATATTAAGGAGTGCGTGTGCCGAGCCCCTGATACTCCATTTGATGAAAGCGCATATTCAAACATTCCGATGACACCATATGAACTTCCTGATGGGCAGACGATAGAAATTGGAGCTGACAGATTCAAGGTTCCTGATGTTCTGTTCAATCCATCCTTGGCTCAGACAATTCCAAACATGGAGAGTTTTGCGGATATTGCTCCATCTGTTCGTGGTTTGCCACAAATGGTTATAGAGAGCATTAATAAGTGCGATGTGGACATTCGAAGAGAACTGTTTAGTAGCATATTGCTTGCTGGTGGTACAGCATCAATGCAACAATTGAAGGAACGCCTTGAGAAAGACTTGCTGGAGGAGTCTCCGCAAACTGCTAGAGTCAAGGTATTGGCCAGTGGAAATTCAACAGAAAGGAGATTCAGTGTTTGGATAGGAGGGAGCATATTAGCATCTCTTGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTACGAGGAGCACGGGGCTTCTTACATTCAGCGGAAGTGCCCGTAA 1329 0.3409 MLIGLILRASNATRGTIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECLLVDLKEHPMLLAEPSSNTQQQRERTAQLMFEKYEVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVAPVHDGYVLQKAVASSPIGGEFLTECMMKSLESKGISIKPRYSFKRKETRPGDFQTVDVDFPNTTESYKLYSQRVIASDIKECVCRAPDTPFDESAYSNIPMTPYELPDGQTIEIGADRFKVPDVLFNPSLAQTIPNMESFADIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQTARVKVLASGNSTERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGASYIQRKCP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0377 442 CDD NBD_sugar-kinase_HSP70_actin 124 201 - -
Vvi17g0377 442 FunFam actin-related protein 4 384 442 - -
Vvi17g0377 442 Pfam Actin 117 441 IPR004000 -
Vvi17g0377 442 PRINTS Actin signature 140 153 IPR004000 -
Vvi17g0377 442 PRINTS Actin signature 165 184 IPR004000 -
Vvi17g0377 442 SMART actin_3 1 442 IPR004000 -
Vvi17g0377 442 SUPERFAMILY Actin-like ATPase domain 118 178 IPR043129 -
Vvi17g0377 442 Coils Coil 18 18 - -
Vvi17g0377 442 PANTHER ACTIN 119 435 IPR004000 -
Vvi17g0377 442 Gene3D - 119 435 - -
Vvi17g0377 442 Gene3D - 163 405 - -
Vvi17g0377 442 Gene3D Actin; Chain A, domain 4 205 335 - -
Vvi17g0377 442 SUPERFAMILY Actin-like ATPase domain 171 441 IPR043129 -
Vvi17g0377 442 Coils Coil 117 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0377 Vvi-Chr17 4031362 4061151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0377 119 441 Miscellaneous Gene Families AT3G53750 38.650 2.70e-69 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0377 K11340 - vvi:100266467 637.876