Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0376 ATGTACGGAGGCGATGAAGTATCGGCCATTGTGATTGACCTTGGTTCGCACACCTGTAAAGCGGGATACGCCGGCGAAGATGCTCCCAAGGCTGTTTTTCCCTCTGTTGTTGGATCAATTGATCAAATGGAAGTTGATGACCCGGCGAATACTGAGAATTCTGGATCTGGCAATGATTCCAAGAACACTGGCAGACCTTTTGATTCAGAAAAAAGCAAGGGAAAACGCAAATTGTATGTGGGCTCTCAAGCCCTTGGGCATCGCCGGGATCATATGGAGGTACTATCACCCATTAAGGATGGAGTAGTTGTTGATTGGGATATTGTTGACAGCATATGGGACCATGCTTTCAGGTAA 357 0.4678 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGSIDQMEVDDPANTENSGSGNDSKNTGRPFDSEKSKGKRKLYVGSQALGHRRDHMEVLSPIKDGVVVDWDIVDSIWDHAFR* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0376 118 MobiDBLite consensus disorder prediction 64 82 - -
Vvi17g0376 118 Pfam Actin 4 117 IPR004000 -
Vvi17g0376 118 Gene3D - 3 118 - -
Vvi17g0376 118 SUPERFAMILY Actin-like ATPase domain 4 117 IPR043129 -
Vvi17g0376 118 MobiDBLite consensus disorder prediction 39 82 - -
Vvi17g0376 118 MobiDBLite consensus disorder prediction 46 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0376 Vvi-Chr17 4013727 4020881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0376 4 117 Miscellaneous Gene Families AT2G42100 39.474 3.09e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0376 K11340 - vvi:100266467 239.965