Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0375 ATGGCGGACAAGTTTTTTATTTTCTCCATTTTCGCTGCCTTCGCTCTCTCTCTTTCTCCTTTTGTTTTCTCCAGGGAGTTATCGCTGGACACTGATTCTCACAGCTCTGTGCTGGATGTTTCGGGTTCTATTCGGAAGACTCTCGACGTGCTATCTCACAAGAGCAGTGTCTCGAAACCCTCTGACCAGAGAGATGAGAAGACCACGTCGTTTTCGCCTACTTCTCTGGCTTCGTCTTTCTCTCTGGAGCTTCACCCGAGGGAGCTTCTTCATGGAGGCTCGCATAAGGACTACAGGGCTTTGATGCTTTCGCGACTCGCTCGTGACTCAGCCCGGGTCAAGGCCATCAATACTAAGCTCCAACTCGCTGTATCCGGCACCGACAAGTCCGATCTCGTGCCGATGGACACGGAGATACTCCATCCACAGGATTTCTCGACTCCGGTCACCTCCGGTACGAGTCAGGGCAGCGGCGAGTACTTTTTGAGAGTTGGAATTGGCCGGCCTTCGAAAACGTTCTACATGGTTATCGACACCGGCAGCGACGTCAACTGGCTTCAGTGCAAGCCTTGCGACGACTGCTATCAGCAAGTCGATCCGATTTTCGATCCGGCTTCATCGTCCTCGTTCTCACGTCTCGGATGCCAAACTCCACAATGCCGGAATCTCGATGTGTTCGCGTGTCGGAATGATTCGTGTCTCTACCAGGTCTCCTACGGCGACGGATCGTACACCGTCGGCGACTTCGCCACTGAAACGGTGTCGTTTGGGAACTCTGGATCTGTGGATAAGGTGGCCATCGGATGCGGTCACGACAACGAGGGCTTGTTTGTCGGTGCGGCTGGCTTGATAGGACTTGGCGGCGGCCCACTCTCGCTCACTTCTCAGATCAAAGCCTCCTCGTTCTCTTACTGCCTCGTCAACCGCGACTCCGTCGACTCGTCGACTCTCGAATTCAACTCTGCCAAGCCAAGTGACTCCGTAACCGCGCCGATTTTCAAAAACAGCAAAGTGGACACGTTCTACTACGTCGGCATCACAGGGATGAGCGTCGGCGGTGAGAAGCTCGCCATCCCGCCCTCCATCTTCGAGGTCGACGGGAGTGGAAAAGGAGGAATCATCGTAGATTGCGGCACCGCTGTGACTCGATTGCAGACTCAGGCCTACAACGCGCTCCGAGACACGTTCGTGAAGCTCACCAAGGACCTGCCATCGACGAGCGGCTTCGCCTTGTTCGACACCTGTTACAATCTCTCCTCGCGAACCAGCGTTCGTGTCCCAACGGTGGCGTTTCTGTTCGACGGAGGAAAGTCCCTGCCCTTGCCGCCGAGCAACTACCTGATTCCCGTAGACTCGGCCGGAACATTCTGTTTGGCGTTTGCTCCAACGACGGCCTCTCTGTCCATCATCGGGAACGTACAGCAGCAGGGGACACGTGTCACGTACGATTTGGCCAACTCGCAAGTTTCCTTCTCCTCGCGTAAATGTTAG 1491 0.5513 MADKFFIFSIFAAFALSLSPFVFSRELSLDTDSHSSVLDVSGSIRKTLDVLSHKSSVSKPSDQRDEKTTSFSPTSLASSFSLELHPRELLHGGSHKDYRALMLSRLARDSARVKAINTKLQLAVSGTDKSDLVPMDTEILHPQDFSTPVTSGTSQGSGEYFLRVGIGRPSKTFYMVIDTGSDVNWLQCKPCDDCYQQVDPIFDPASSSSFSRLGCQTPQCRNLDVFACRNDSCLYQVSYGDGSYTVGDFATETVSFGNSGSVDKVAIGCGHDNEGLFVGAAGLIGLGGGPLSLTSQIKASSFSYCLVNRDSVDSSTLEFNSAKPSDSVTAPIFKNSKVDTFYYVGITGMSVGGEKLAIPPSIFEVDGSGKGGIIVDCGTAVTRLQTQAYNALRDTFVKLTKDLPSTSGFALFDTCYNLSSRTSVRVPTVAFLFDGGKSLPLPPSNYLIPVDSAGTFCLAFAPTTASLSIIGNVQQQGTRVTYDLANSQVSFSSRKC* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0375 496 FunFam Aspartyl protease family protein 2 321 496 - -
Vvi17g0375 496 ProSiteProfiles Peptidase family A1 domain profile. 160 492 IPR033121 -
Vvi17g0375 496 Gene3D Acid Proteases 135 319 IPR021109 -
Vvi17g0375 496 PANTHER ASPARTYL PROTEASES 70 490 IPR001461 GO:0004190|GO:0006508
Vvi17g0375 496 SUPERFAMILY Acid proteases 154 496 IPR021109 -
Vvi17g0375 496 Gene3D Acid Proteases 322 496 IPR021109 -
Vvi17g0375 496 Pfam Xylanase inhibitor C-terminal 342 492 IPR032799 -
Vvi17g0375 496 FunFam Probable aspartic protease At2g35615 140 320 - -
Vvi17g0375 496 Pfam Xylanase inhibitor N-terminal 160 319 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0375 Vvi-Chr17 4010440 4011930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0375 151 496 Miscellaneous Gene Families AT1G77480 26.509 2.73e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0375 K22683 - vvi:100242440 934.865