Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0374 ATGAATGTTGGGTGCTGTGGCGTCAACTTTGGCTCCTTATCCTCCTCAATCGCCGCCCTCCGTTTCCCGAATTGGCCCCGTTCCCTCTCCTTCTCCTCCAGAACCCTAATCCCCTTTTCTTCTCTTTCGACACCCACACCTATGGACTCCTCGCCCCGCCCCGTCAAGCCCTGGCTTCTCGTGGGCCTCGGTAACCCCGGCAAGAAGTACAACGGCACCCGACATAACGTAGGTTTTGAGATGGTAGATGCTATAGCTGAAGCTGAAGGAATATCCATTAGCAGTGTTTCCTTCAAATCGCTGTTTGGAAAAGGTTTTATTGGAAATGTTCCGGTTATGCTAGCCAAACCGCAGACTTTCATGAATGTGAGCGGTGAATCTGTTGGAGCTATTGTTTCATATTACAAGATTCCGTTGAAGCAAGTCCTTGTGATTTTTGATGACTTAGATCTGCCTTTTTCAAAACTACGGCTATTGCCAAAAGGTGGACATGGAGGACACAATGGGATGAGAAGTGTGATTGATCACTTTAAGGGGAGTCGTGATTTTCCTCGTTTAAGAATTGGCATTGGGAGGCCTCCTGGGAAAATGGATACTGCAAACTTTGTTCTTAGTCCATTCAGTAAACGAGAACGTGAAGAGTTGGATTTCACATTTCAAAATGGTGTGGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTAATAAAAGCGCAAGTTTTGTGAACACTGCCAAATCCTTGGAACAACATAGTCAATAA 759 0.4585 MNVGCCGVNFGSLSSSIAALRFPNWPRSLSFSSRTLIPFSSLSTPTPMDSSPRPVKPWLLVGLGNPGKKYNGTRHNVGFEMVDAIAEAEGISISSVSFKSLFGKGFIGNVPVMLAKPQTFMNVSGESVGAIVSYYKIPLKQVLVIFDDLDLPFSKLRLLPKGGHGGHNGMRSVIDHFKGSRDFPRLRIGIGRPPGKMDTANFVLSPFSKREREELDFTFQNGVEAVRILLLEGFNKSASFVNTAKSLEQHSQ* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0374 252 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 163 173 IPR018171 GO:0004045
Vvi17g0374 252 Gene3D - 48 245 IPR036416 GO:0004045
Vvi17g0374 252 Pfam Peptidyl-tRNA hydrolase 59 237 IPR001328 GO:0004045
Vvi17g0374 252 PANTHER PEPTIDYL-TRNA HYDROLASE 51 242 IPR001328 GO:0004045
Vvi17g0374 252 SUPERFAMILY Peptidyl-tRNA hydrolase-like 57 242 IPR036416 GO:0004045
Vvi17g0374 252 FunFam Peptidyl-tRNA hydrolase 55 245 - -
Vvi17g0374 252 Hamap Peptidyl-tRNA hydrolase [pth]. 57 235 IPR001328 GO:0004045
Vvi17g0374 252 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 70 83 IPR018171 GO:0004045
Vvi17g0374 252 NCBIfam aminoacyl-tRNA hydrolase 58 227 IPR001328 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0374 Vvi-Chr17 3997603 4001148 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0374 K01056 - vvi:100264722 507.679