Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0371 ATGGCTGGGATCTTCGAGTACTTCGTGGTGTGTGGGCTTGGTCCGGAGGTCCGAACCCTAGACGGCAACAAGGGCTTCCATGGAATGGGCGTTATGTACTTGTCCTCTCTTCTTGATCAGTACCCTCCTTCCAATCACTCCCTCTACCCTCCTCCGCCGCCTCAGCTTCCCACTTGTGTTCTGCCAGCTGGTGTGGAGTTCTATTCATCAGGGTTTGATTCTAATGATGTCTCAACTTTTCCTCGGAGCTATCCCATTGTTTTAACTGAGGGTGATGGTTCTAAAATTTATGTTAGCTGCATTGCTTTTCGAGATCCAGTCAGTGATGATATTGCAGAGGCTTATCGTATTCCCCCAAATTCCTTTGCTGACAAGTGTATTTGTCTTGTTTCGCGCTTGCCTAGTTTCTGTATGCTTCGAAATGCACTGGAGGAACTATTTGCACTTTGCTTTTCTCCTACAGGAAGCAGCAAGCCCCTGTGGGACGTTATAGAATATATGGTGTCTAATGTTCCTCTGCCTACTCCTGGAAAGGATAGAGTCCTATTTGCTATTGAGAACTGCCTGCTTTCTGTGGAGGCTCCTCCAAAAGAGGGGCTCCCCCATGCTGATATATCATTCCAGCCACTGGTAGAATGCTTGGATGTTGACAACTTAATTACATTTTTTACAGCTGTATTACTTGAAAGGAGGATATTGCTGCGATCAGACAAGTACTCACTTTTAACTCTTGTATCCGAGGCCATATGTCATTTAATTTATCCATTCCGGTGGCAGCATGTATACATTCCATTACTATTTTTCAGTGGAGTGGACTATATTGATGCTCCTACACCATATATGATGGGTCTCCATTCAGGTGTTGACACTTCTAATCTGGCAATGGATGGTGTTGTTGTTGTTGACCTTGCATACAACCGGATTACGACAACAGAGGAAATACCTCCTATACCGGAGCCAGATCTATCGTCTTTGCGTGGTGATCTACTAAAGTTATTGCATCCCAATGTGGTGGGGATAGATGCGATGAAAGCTAGTTTTGGTAATTCATCAGAGCAATATCCTAAAGTTGGCAACAAACCTTGGGGAGAAGATCATGATCTTCAACTTAGACTAATATTCCTGAAGTTCTTTGCATCAATTTTGGGTGGCTACCGCAATTTTATTGAAAATACGGGAACACATGTCTTCAACACTCAAGCATTCTTGAAGAAGCGCGCTCGATCAACCAATCAACCACCAGAGCCCATGATAACTCAGTTCTTGGACTCTCATGGCTTCTTGGATTATGCGGAGAGGGGTTTAGGTTCTGATGAAAACAATAGCAATCTTCTTGACAAATTACAAGATGCAATTGGAAGGGGTCAAAACCCTATGTCAATTCTTCCATCATCTTTGGTAGAGCCTGAGATTATAACAATATCGGATCCTGGTGTTGGAATATCAGGATCTGGTGCGAAATATACTTATGATAGGTTTCCTTCAAACAATAGAACAGAAGAGCAAAAAGAAAAGAGGAAGCAGATTCTTGCAGCAGCAAGTGGAGCTTTTGATTATTCAGGAAGTAGACATACTCCTAGTTCACCTTCTGTGCTTGTGGGTAAAGATAAGGCAGAAAGTCTGAGTCCAAGAGAAAGGGCTGCAGAACGGGAACGCATGGTTCTGGACATCAAAGTCAAACTGCAGGGATTATGGTTGCGTCTTTTGAAATTGGGAGCAACTGATGATCCTCTCTCATCATTTGAATATGGTACAATCCTTGCTTTGATTGAGTCTGATGCGGAAGGAATTGGCGGTAGTGGATTTGTTGAGTGTATAAGGGAGCACATACATTCAGGATGGCAATGTCATTTGACTGAGGAGCAGTTTATTGCAGTCAAAGAATTGCTCAAAACTGCAATTGGTCGTGCAACCTCTCGGAATGACATGCCCACCATCAGAGATGCACTTGAGGTGTCTGCTGAAATGTATAAGAAAGACGCTAATAATGTTCCAGACTATGTCCAACGCCATCTTATTTCTCTATCTATCTGGGAAGAGTTACGGTTTTGGGAAGGATACTTTGACTATCTAATGGATCGATCTTCAAACAAGTCAACCAATTACGCAACTCAGGTGACAACACAGCTAATTTTAGTGGCATCACACATGGCGGGGTTGGGACTTCATGATAATGATGCTTGGTACATGATTGAAACAATTGCGGAGAAAAACAACATTGGAAACAAGCAGTTTATAAAACTCAGAGGTTTCTTGTCACATGTCCAACAACTACGCATCAGTTACTGGGGAATCTCTTCCGTGAAGGCCCAATCCATGTCCTCATTTGGATTGCCATCCCCTCATTCACATGATTCCACAGATGATGACCAACAACCTGCTGAGGCTTCTGGCGTTGGAAGGAGCTGGGTCCAGAGCATGTTTAGCAGAGATACAACATCAAGAACAAATTCTTTCAGTCGTGTTCGTAGGTGGACTTCTGATAGTGGCACTTTAGCTGCAAATGAGAATGGAACTCCTCGCAAACAAGATCTATCCTCTTTTGGTCAAAAGAAAATTCAGACCAGTGTTCGCATGCTTAGAGGTCATAGTGGTGCTGTTACTGCATTACATTGTGTAACAAGAAGAGAGGTGTGGGATCTTGTGGGTGATCGTGAAGATGCAGGTTTCTTTATCAGTGGAAGCACAGACTGCTTGGTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAGACTGTCCGTGCAATAAGTTCTGATCGTGGGAAAGTGGTATCAGGATCTGATGATCAGTCTGTTATTGTATGGGATAAACAAACATCTCAACTTCTAGAAGAGCTAAAAGGCCATGATGGACAGGTCAGCTGTGTGCGTATGCTGTCAGGAGAACGTGTCCTTACTGCTGCCCATGATGGAACTGTGAAGATGTGGGATGTGAGAACTGATACGTGTGTGGCAACTGTTGGTCGTTGCTCGAGTGCAGTTCTTTGCATGGAGTATGATGACTCAACAGGAATCTTGGCTGCTGGTGGTAGAGATGCGGTTGCAAACATTTGGGACATTCGTGCCGGTCGGCAGATGCACAAGCTTTTAGGGCATACAAAATGGATCCGGTCAATAAGAATGGTCGGAGATACTGTTATTACTGGTAGTGATGATTGGACAGCAAGAATGTGGTCTGTTTCACGAGGTACATGTGATGCTGTTCTAGCTTGCCATGCTGGTCCAATTTTATGTGTTGAGTATTTGATGTCAGACAGAGGAATAATAACAGGTTCAACTGATGGGCTGCTTCGATTTTGGGAAAATGAAGAGGGAGGTTTAAGATGCGTGAAGAATGTTACTATTCATAATGCTCCTATCTTATCTGTCAATGCTGGGGAACACTGGTTAGGAATTGGAGCAGCTGATAATTCTATGTCTCTCTTTCATCGGCCTCAAGAAAGACTAGGTGGCTTCTCTAGCACAGGATCAAAGATGGCTGGGTGGCAACTATACAGAACACCGCAAAGAACAGTTGCCCTGGTAAGATGCGTGGCTTCAGATCTTGAAAGAAAAAGGATATGCAGTGGTGGTCGTAATGGACTTCTTAGGCTATGGGAAGCGACCATCAACATCTAA 3648 0.4378 MAGIFEYFVVCGLGPEVRTLDGNKGFHGMGVMYLSSLLDQYPPSNHSLYPPPPPQLPTCVLPAGVEFYSSGFDSNDVSTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSDDIAEAYRIPPNSFADKCICLVSRLPSFCMLRNALEELFALCFSPTGSSKPLWDVIEYMVSNVPLPTPGKDRVLFAIENCLLSVEAPPKEGLPHADISFQPLVECLDVDNLITFFTAVLLERRILLRSDKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLAYNRITTTEEIPPIPEPDLSSLRGDLLKLLHPNVVGIDAMKASFGNSSEQYPKVGNKPWGEDHDLQLRLIFLKFFASILGGYRNFIENTGTHVFNTQAFLKKRARSTNQPPEPMITQFLDSHGFLDYAERGLGSDENNSNLLDKLQDAIGRGQNPMSILPSSLVEPEIITISDPGVGISGSGAKYTYDRFPSNNRTEEQKEKRKQILAAASGAFDYSGSRHTPSSPSVLVGKDKAESLSPRERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWQCHLTEEQFIAVKELLKTAIGRATSRNDMPTIRDALEVSAEMYKKDANNVPDYVQRHLISLSIWEELRFWEGYFDYLMDRSSNKSTNYATQVTTQLILVASHMAGLGLHDNDAWYMIETIAEKNNIGNKQFIKLRGFLSHVQQLRISYWGISSVKAQSMSSFGLPSPHSHDSTDDDQQPAEASGVGRSWVQSMFSRDTTSRTNSFSRVRRWTSDSGTLAANENGTPRKQDLSSFGQKKIQTSVRMLRGHSGAVTALHCVTRREVWDLVGDREDAGFFISGSTDCLVKIWDPTLRGSELRATLKGHTKTVRAISSDRGKVVSGSDDQSVIVWDKQTSQLLEELKGHDGQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTVITGSDDWTARMWSVSRGTCDAVLACHAGPILCVEYLMSDRGIITGSTDGLLRFWENEEGGLRCVKNVTIHNAPILSVNAGEHWLGIGAADNSMSLFHRPQERLGGFSSTGSKMAGWQLYRTPQRTVALVRCVASDLERKRICSGGRNGLLRLWEATINI* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0371 1215 ProSitePatterns Trp-Asp (WD) repeats signature. 974 988 IPR019775 -
Vvi17g0371 1215 Pfam WD domain, G-beta repeat 914 946 IPR001680 GO:0005515
Vvi17g0371 1215 Pfam WD domain, G-beta repeat 857 904 IPR001680 GO:0005515
Vvi17g0371 1215 Pfam WD domain, G-beta repeat 951 987 IPR001680 GO:0005515
Vvi17g0371 1215 Pfam WD domain, G-beta repeat 1034 1069 IPR001680 GO:0005515
Vvi17g0371 1215 SMART DENN_cls 122 306 IPR001194 -
Vvi17g0371 1215 MobiDBLite consensus disorder prediction 518 546 - -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats profile. 916 955 IPR001680 GO:0005515
Vvi17g0371 1215 Pfam uDENN domain 36 103 IPR005113 -
Vvi17g0371 1215 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 35 1208 - -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats profile. 956 996 IPR001680 GO:0005515
Vvi17g0371 1215 Gene3D - 1000 1214 IPR015943 GO:0005515
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 916 946 - -
Vvi17g0371 1215 MobiDBLite consensus disorder prediction 776 797 - -
Vvi17g0371 1215 ProSitePatterns Trp-Asp (WD) repeats signature. 1016 1030 IPR019775 -
Vvi17g0371 1215 CDD WD40 856 1152 - -
Vvi17g0371 1215 Coils Coil 1215 1215 - -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats profile. 1079 1111 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 1171 1210 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 1116 1153 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 949 987 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 1032 1069 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 1072 1111 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 990 1029 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 853 904 IPR001680 GO:0005515
Vvi17g0371 1215 SMART WD40_4 909 946 IPR001680 GO:0005515
Vvi17g0371 1215 FunFam DENN domain and WD repeat-containing protein SCD1 1038 1215 - -
Vvi17g0371 1215 FunFam DENN domain and WD repeat-containing protein SCD1 1 175 - -
Vvi17g0371 1215 Gene3D - 202 387 IPR043153 -
Vvi17g0371 1215 SMART uDENN_cls 1 104 IPR005113 -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats profile. 1001 1038 IPR001680 GO:0005515
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1079 1111 - -
Vvi17g0371 1215 PRINTS G protein beta WD-40 repeat signature 933 947 IPR020472 -
Vvi17g0371 1215 PRINTS G protein beta WD-40 repeat signature 974 988 IPR020472 -
Vvi17g0371 1215 PRINTS G protein beta WD-40 repeat signature 1016 1030 IPR020472 -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 956 990 - -
Vvi17g0371 1215 ProSiteProfiles Tripartite DENN domain profile. 19 442 IPR037516 -
Vvi17g0371 1215 SUPERFAMILY WD40 repeat-like 857 1210 IPR036322 GO:0005515
Vvi17g0371 1215 Gene3D - 810 999 IPR015943 GO:0005515
Vvi17g0371 1215 SMART dDENN_cls 366 434 IPR005112 -
Vvi17g0371 1215 FunFam DENN domain and WD repeat-containing protein SCD1 202 387 - -
Vvi17g0371 1215 ProSiteProfiles Trp-Asp (WD) repeats profile. 1039 1078 IPR001680 GO:0005515
Vvi17g0371 1215 Gene3D - 1 176 - -
Vvi17g0371 1215 FunFam DENN domain and WD repeat-containing protein SCD1 816 1037 - -
Vvi17g0371 1215 Pfam DENN (AEX-3) domain 124 304 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0371 Vvi-Chr17 3899131 3949043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0371 852 991 Acyl Lipid Metabolism Gene Families AT3G18860 30.986 4.10e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0371 - - vvi:100254135 2387.45