Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0364 ATGCAGAGAGATATGGAGTTCGGGCAGTCTCCCCAGCTCAAAGGGGTTGTTATAATCACTCTTCCACCACCTGATAATCCTTCTCTTGGGAAAACCATTACCGCTTTCACGCTCTCTGATCCACCACTTGACCGTCCCCACCACACCCATCAACAACTTCAGCGCCAACAACACCAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAACCCCATCAGCTCCCAAGTCCATCGCCCCCGAACCCTGCGCTCCAGTTCTCTGTCAGAAAACTCTCTCTTGGTAACCCAAGAATCCTTATGGGGTTTCTGGGTGTCTCTCTTTTTGTGTTTCTTTTGTGGAATTTTGCATCTTCAAGCCCCCTTGTTGAATTGCGCCGCAAAAACGATGATCGCGAACCCACTTCTTTTATCTTGCCTTTGTATCCCAAATTGGGTTCTCGATCACTAGGGGATTTGGAGCTCAAATTGGGGAAGTTTGTGGACTTTCATGTAAATGATATGAAGCCCGGAGGGATCAACAAATTGGCTACTTCTGTCTCTGCTTTCGATTCATCTACCATTTTCCCTGTTAGGGGCGACGTTTATCCAAATGGCTTATATTTCACACACATTTTTGTTGGGAGTCCTCCAAGACGTTATTTTCTTGACATGGATACCGGCAGTGACTTAACATGGATTCAGTGTGATGCTCCATGCACTAGCTGTGCCAAGGGACCAAATCCTTTGTACAAGCCCAAAAAAGGCAACTTAGTACCGTTGAAGGACTCATTGTGTGTAGAAGTTCAGAGAAACCTAAAGACAGGATATTGTGAGACTTGTGAACAGTGTGACTATGAGATAGAATATGCAGATCATAGCTCCTCAATGGGTGTTCTTGCAAGTGATGATCTTCATCTAATGCTTGCAAATGGATCACTGACCAAGTTAGGCATTATGTTCGGGTGTGCATATGATCAACAAGGCTTACTTTTAAACTCTCTGGCAAAGACTGATGGAATCCTTGGACTTAGCAAAGCTAAAGTTAGCTTACCTTCTCAATTGGCAAGCCAAAGGATCATTAACAATGTGCTCGGTCACTGCCTTACCAGTGATGCAACTGGTGGTGGATATATGTTCTTAGGTGATGACTTTGTACCCTACTGGGGTATGGCATGGGTACCCATGCTTAACAGCCATTCCCCAAATTATCACTCACAGATTATGAAAATAAGTCATGGAAGCAGGCAGCTTAGCTTAGGCAGGCAGGATGGTAGAACAGAACGGGTAGTTTTTGATACCGGCAGTTCTTACACATACTTTCCAAAAGAAGCATATTATGCTTTAGTTGCTTCTCTTAAAGATGTTTCTGATGAAGGGCTCATCCAAGATGGGTCAGATCCTACATTGCCTGTTTGTTGGCGAGCTAAATTTCCAATAAGATCTGTGATAGATGTGAAGCAGTTCTTCCAGCCTCTAACCCTTCAGTTTAGGAGCAAATGGTGGATTGTCTCCACAAAATTCCGGATTCCTCCAGAAGGCTACTTGATAATAAGTAATAAAGGCAATGTGTGCTTGGGTATCCTTGATGGAAGCAATGTGCATGATGGATCCACAATTATACTTGGAGACATCTCATTGCGGGGAAAATTGGTGGTGTACGACAATGTGAACCAGAAAATTGGGTGGGCACAGTCCACTTGTGTGAAGCCACAAAAAATTAAAAGCCTTCCATTCTTCTGA 1722 0.4402 MQRDMEFGQSPQLKGVVIITLPPPDNPSLGKTITAFTLSDPPLDRPHHTHQQLQRQQHQEEEEEEEEEEEEPHQLPSPSPPNPALQFSVRKLSLGNPRILMGFLGVSLFVFLLWNFASSSPLVELRRKNDDREPTSFILPLYPKLGSRSLGDLELKLGKFVDFHVNDMKPGGINKLATSVSAFDSSTIFPVRGDVYPNGLYFTHIFVGSPPRRYFLDMDTGSDLTWIQCDAPCTSCAKGPNPLYKPKKGNLVPLKDSLCVEVQRNLKTGYCETCEQCDYEIEYADHSSSMGVLASDDLHLMLANGSLTKLGIMFGCAYDQQGLLLNSLAKTDGILGLSKAKVSLPSQLASQRIINNVLGHCLTSDATGGGYMFLGDDFVPYWGMAWVPMLNSHSPNYHSQIMKISHGSRQLSLGRQDGRTERVVFDTGSSYTYFPKEAYYALVASLKDVSDEGLIQDGSDPTLPVCWRAKFPIRSVIDVKQFFQPLTLQFRSKWWIVSTKFRIPPEGYLIISNKGNVCLGILDGSNVHDGSTIILGDISLRGKLVVYDNVNQKIGWAQSTCVKPQKIKSLPFF* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0364 573 MobiDBLite consensus disorder prediction 24 84 - -
Vvi17g0364 573 Gene3D Acid Proteases 382 567 IPR021109 -
Vvi17g0364 573 FunFam Aspartyl protease family protein 177 376 - -
Vvi17g0364 573 MobiDBLite consensus disorder prediction 43 59 - -
Vvi17g0364 573 PRINTS Pepsin (A1) aspartic protease family signature 207 227 IPR001461 GO:0004190|GO:0006508
Vvi17g0364 573 PRINTS Pepsin (A1) aspartic protease family signature 423 434 IPR001461 GO:0004190|GO:0006508
Vvi17g0364 573 PRINTS Pepsin (A1) aspartic protease family signature 533 548 IPR001461 GO:0004190|GO:0006508
Vvi17g0364 573 Coils Coil 48 71 - -
Vvi17g0364 573 Gene3D Acid Proteases 177 376 IPR021109 -
Vvi17g0364 573 PANTHER ASPARTYL PROTEASES 153 555 IPR001461 GO:0004190|GO:0006508
Vvi17g0364 573 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 423 434 IPR001969 GO:0004190|GO:0006508
Vvi17g0364 573 ProSiteProfiles Peptidase family A1 domain profile. 201 557 IPR033121 -
Vvi17g0364 573 Pfam Xylanase inhibitor C-terminal 397 557 IPR032799 -
Vvi17g0364 573 Pfam Xylanase inhibitor N-terminal 201 376 IPR032861 -
Vvi17g0364 573 SUPERFAMILY Acid proteases 195 563 IPR021109 -
Vvi17g0364 573 FunFam Aspartyl protease APCB1 381 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0364 Vvi-Chr17 3799371 3805737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0364 183 573 Miscellaneous Gene Families AT1G77480 43.003 3.39e-101 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0364 - - vvi:100261096 1093.57