Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0363 ATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGATCGATGAGCTCAAGAACGAGGACATTCAGCTTCGATTGAACTCGATCCGGCGGCTCTCGACGATTGCTAGGGCGCTAGGAGAGGAGAGGACTAGGAAGGAGTTGATTCCATTTCTGAGCGAGAATAATGATGACGATGATGAGGTGCTTCTTGCGATGGCTGAAGAATTGGGGGTATTTATTCCCTATGTCGGAGGTGTTGAGCACGCGAATGTTCTGCTTCCTCCATTGGAGACCCTCTGCACTGTTGAGGAAACTTGTGTGAGGGACAAAGCGGTGGAGTCGTTATGCAGGATTGGAGCTCAAATGAGGGAGCCAGATTTGGTGGAATCCTTCATTCCTTTGGTGAAGAGATTGGCTGCTGGCGAGTGGTTTACTGCTCGAGTTTCCTCATGTGGATTATTTCATATTGCTTACCCCAGCGCTCCAGAGACATTAAAAACTGAATTACGAGCAATATATAGCCAGCTGTGTCAAGATGACATGCCAATGGTGAGGAGATCTGCTGCATCAAATCTGGGAAAGTTTGCTGCTACTGTTGAAGCTGCTCATTTGAAGGCTGACATCATGTCAATATTTGAGGATCTGACACAGGATGATCAAGATTCTGTTAGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTCGGAAAGCTGTTGGAACCTCAAGATTGTGTAGCACATATTCTTCCCGTAATTGTGAATTTCTCTCAGGATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTATGTGAAGCTGTTGGTCCTGAGCCTACCAGGTCAGACTTGGTTCCTGCATATGTTCGGTTGCTTCGTGACAATGAGGCTGAAGTACGCATAGCAGCTGCAGGAAAAGTAACAAAATTTTGCCGGATTTTGAACCCAGAACTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTATCATCAGATTCTTCCCAGCATGTTCGTTCTGCTTTGGCTTCAGTTATTATGGGAATGGCACCTGTTTTAGGAAAGGACGCAACAATAGATCAACTTCTGCCCATTTTCCTTTCTCTGCTTAAAGATGAGTTTCCTGATGTCCGACTGAATATTATCAGCAAGCTTGATCAAGTAAACCAGGTGATTGGAATTGATCTGCTGTCTCAATCCTTACTGCCGGCCATTGTTGAGCTTGCTGAGGATAGACACTGGAGGGTTCGGCTTGCAATAATAGAATACATTCCTTTACTAGCAAGTCAGCTGGGTGTTGGTTTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAATGGTTAAAAGATAAGGTTTATTCAATTCGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAGGAATTTGGCCCAGATTGGGCAATGCAGCACATAATTCCACAGGTTTTGGATATGATTAACAACCCACACTATCTGTATCGGATGACCATCCTCCATGCAATTTCTCTCCTTGCCCCTGTTATGGGCCCAGAAATTACATGCTCGAAACTTCTGCCAGTGGTCATTAATGCAGCAAAAGACAGGGTACCCAACATAAAGTTCAATGTGGCTAAGGTGTTGCAGTCACTTACTCCTATAGTGGACCAGTCTGTGGTAGACAAGACGATTCGTCCCTGTTTGGTTGAGCTGAGTGAGGACCCAGATGTTGATGTTAGGTTTTTTGCAAGCCAAGCACTACAGGCAAGTGATCAGATCATGATGTCTAGCTAG 1764 0.449 MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREPDLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVRRSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQVLDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQSLTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Vvi17g0363 587 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 581 - -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Vvi17g0363 587 SUPERFAMILY ARM repeat 8 578 IPR016024 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Vvi17g0363 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 5 586 - -
Vvi17g0363 587 Pfam HEAT repeats 361 459 - -
Vvi17g0363 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Vvi17g0363 587 Gene3D - 2 579 IPR011989 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Vvi17g0363 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0363 Vvi-Chr17 3781267 3797974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0363 K03456 - vvi:100266203 1148.27