Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0352 ATGAGAGGCGGCGATCGTCGACTCCCTCCATCCGTACACTATCCGGCGACGTCTGGACGCAAACGCAAGCCCTCTGCCATCCCGAAGCAATGTCATGATCACGTAAAAAGGCAAAGATTGGTTGTCAAAGAAGAAACCGTAACCCTAATAGCCAACGGAGCTGACGAGCTGCCCACATCAAACAGATTCAGTTCAATTCAATGTTCACAACGACAGGAGAAGAAGCGGAAGAAGCTAAAAAGAAGACAAAAATCAGCAACAACAGAGGCTCATCGCAGATGGGTTTTCTCTACTCGCGATTTATCCGATTACAAAGATAAGGTTGTTGTTGTTTCCTACAATATACTAGGTGTTGAAAATGCATCAAACCATCCAGATTTGTACTCTAAAGTCCCAACAAAATTGTTGGATTGGAACCGGCGAAGAAAGCTCATTAATAAGGAGATCAATCAGTATAATCCAAGCATTCTTTGTTTTCAGGAGGTTGACCGTTTCAATGATTTAAATAATCTTCTGAAAAAAGGGGGTTTTAAAGGAGTTTATAAGGCTCGCACAGGTGAAGCATATGATGGGTGTGCTATGTTCTGGAAAGATGATCTCTTTACTCTTTTGCATCAAGAGAACATAGAGTTTCAAAATTTTGGTCTCCGTCACAATGTTGCTCAACTTTGTGTTTTGAAGATGAATCGAAATCAGTCCAATTCCGATGTAGATACTAAAGCATCACAGATTCCACCTACTCGAAGTTTAATTGTTGGAAATATACATGTGCTCTTCAACCCAAATCGAGGAGACATCAAGCTAGGTCAGATGCGGCTGTTTCTCGAGAAGGCTCACAAACTATCACAAGAATGGGGCTGCATCCCTGTTGTACTTGCTGGAGACCTTAACAGCATGCCACAGAGTGCACTGTATCAGTTTCTGGCCTCATCTGAGTTGGACGTCCGGTTACATGATCGCAGAAAAATTTCTGGGCAGGTGGAACATCAGTCACAACATAGAGCCTACAGATATCAGAATGAAGATGCATCCAGATCAAGGCCATTGGTGCATAGATGGAGCAATGAAGAATTAAGACTTGCCACTGGCAGTGATGGAGTTACTCATCTTCAGCACTGTTTAAAGCTATGTAGTGCATACTATGGCATTCCTGTAAGATGTTCAAGTCTTATAATAAATGCTTGTGACTTTCTGGAAATATCACAGTTAACTTGCCCTGAGAAGTTTCTTTCATTGTCTTTGACAAAGATAGAGCCATGA 1260 0.4198 MRGGDRRLPPSVHYPATSGRKRKPSAIPKQCHDHVKRQRLVVKEETVTLIANGADELPTSNRFSSIQCSQRQEKKRKKLKRRQKSATTEAHRRWVFSTRDLSDYKDKVVVVSYNILGVENASNHPDLYSKVPTKLLDWNRRRKLINKEINQYNPSILCFQEVDRFNDLNNLLKKGGFKGVYKARTGEAYDGCAMFWKDDLFTLLHQENIEFQNFGLRHNVAQLCVLKMNRNQSNSDVDTKASQIPPTRSLIVGNIHVLFNPNRGDIKLGQMRLFLEKAHKLSQEWGCIPVVLAGDLNSMPQSALYQFLASSELDVRLHDRRKISGQVEHQSQHRAYRYQNEDASRSRPLVHRWSNEELRLATGSDGVTHLQHCLKLCSAYYGIPVRCSSLIINACDFLEISQLTCPEKFLSLSLTKIEP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0352 419 Coils Coil 69 89 - -
Vvi17g0352 419 MobiDBLite consensus disorder prediction 1 31 - -
Vvi17g0352 419 Gene3D Endonuclease/exonuclease/phosphatase 78 394 IPR036691 -
Vvi17g0352 419 MobiDBLite consensus disorder prediction 61 86 - -
Vvi17g0352 419 Pfam Endonuclease/Exonuclease/phosphatase family 112 310 IPR005135 GO:0003824
Vvi17g0352 419 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 61 381 - -
Vvi17g0352 419 SUPERFAMILY DNase I-like 105 318 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0352 Vvi-Chr17 3695153 3712486 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0352 - - vvi:100252635 784.252