Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0345 ATGGCTTCCTCCATGGTCTCCTCCGCCACCGTGGCTACAATCAACCGTGCTACCCCGGCTCAGGCCAACATGGTGGCCCCCTTCACCGGACTCAAATCTTTGTCGACTTTCCCTGGCACCCGAAAAGCCAACACCGACATCACCTCCGTCGCTAGCAATGGTGGCCGAGTTCGCTGCATGAAGGTTTGGCCTACAGAAGGGTTGATGAAGTTCGAGACTCTCTCATACCTCCCACCCCTCAACGACGAACAGCTATGCAAGGAAGTGGATTACCTTCTCCGCATGAAATGGATTCCTTGCTTGGAATTCACCAAGCTGTACCCATACCCCCACAGAGAGCACAACAGATCGCCAGGATACTACGACGGAAGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACTGACTCAGCCCAGGTGATTAAGGAGGTGCAAGAAGCCAGGACCGCGTACCCTGACGCCCACATCCGAATCATCGGATTCGACAATAACCGCCAAGTGCAATGCATCGCTTTCATTGCCTACAAGCCCAGCTGA 543 0.5488 MASSMVSSATVATINRATPAQANMVAPFTGLKSLSTFPGTRKANTDITSVASNGGRVRCMKVWPTEGLMKFETLSYLPPLNDEQLCKEVDYLLRMKWIPCLEFTKLYPYPHREHNRSPGYYDGRYWTMWKLPMFGCTDSAQVIKEVQEARTAYPDAHIRIIGFDNNRQVQCIAFIAYKPS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0345 180 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 69 180 IPR000894 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 48 66 IPR024681 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 69 95 IPR024681 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 97 112 IPR024681 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 153 179 IPR024681 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 21 38 IPR024681 -
Vvi17g0345 180 PRINTS RuBisCO small subunit signature 119 148 IPR024681 -
Vvi17g0345 180 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 60 180 - -
Vvi17g0345 180 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 46 IPR024680 -
Vvi17g0345 180 SUPERFAMILY RuBisCO, small subunit 60 180 IPR036385 -
Vvi17g0345 180 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 180 IPR024681 -
Vvi17g0345 180 Pfam Ribulose bisphosphate carboxylase, small chain 71 179 IPR000894 -
Vvi17g0345 180 CDD RuBisCO_small 70 179 IPR000894 -
Vvi17g0345 180 SMART RuBisCO_small_2_a 70 179 IPR000894 -
Vvi17g0345 180 Gene3D Ribulose bisphosphate carboxylase, small subunit 60 180 IPR036385 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0345 Vvi-Chr17 3623543 3624317 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0345 K01602 - vvi:100267942 373.244