Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0340 ATGTCGGACAAGCCGATTGCCGCCGATGCTCTGCCGTCGAACTCCGACGAATTCCCCCAGATGTCCAGGTCTGAACTCTACGATATGATGTATCAGATGAAGCTGCTTACCGATGAGAATCCGCAACAAGCACGCCAGATTCTGGCTGAGAATCCTCGATTGGCCCGATTTGTCTTTCAGGCTCAAATAATGCTTGGAATGATGGGGACCCCTCGAGAGACTCCAAGTACTCAGTCATCAGTATCACAGCATACTCAGCAGCCAATCGCTCTGGCCACGCAACAGATGTCAGGAACAAGTGGATCTCAAAACCAAGTTCCTGTAACAAAGCAAATGGAAAACCCAATGCAGATTGCATCTGCAGCAGCCCAGATGGCCCCCTCTCAAATTCCTAATTTGCTTTCCCATCCAATTAGTTCTGCTTCTCAGCCACCATTAGCTCGACCTCAGATGCCTACAGTCTCCAGCCAATTGCAACAACCAGGACAGACACCTATCCTTCCACATATGCCGCTGCAACCACCATTGCCTCCACATCCTAGACTTCCATCAATGCCAGCTTTCCAACACCAGCACCCGTCACAAATGGGCTCCAGTATGGGATTCCAACAACCTGGTGGTCAGCTGCATCATTCTCAGCCTGTGTTTCATTCAGGTACCCAACCTAATGCTAGCATTGGGCCTTCCTTTACACAGGCACAGCCGCCACTTCCAAGTCAGCTGCCATCGCAATCTTTTAATCAGATTGGAGGTTCACATTTAAGGACAGAGTTCAGTAATCCTGCTGGAAGCTCCATGCAAGCGGACAGGGGATCTTCTGCCTGGATGCCTCCCCGTCATGAGAGTACAATGGGAACACAGATCCCAGGACCTCCACCATTAGTTCCTGGGTTTGGCCCTAGCAACCCACCTCCACGCCCCCCAATGTTAAACCCCGAGATGGAGAAGGCTTTGCTTCAGCAGGTAATGAGCCTAACCCCAGAGCAGATTAATTGCCTGCCTCCGGAGCAAAGGCATCAGATTCTTCAGTTGCAACAGATGTTGCGGCAATGA 1053 0.509 MSDKPIAADALPSNSDEFPQMSRSELYDMMYQMKLLTDENPQQARQILAENPRLARFVFQAQIMLGMMGTPRETPSTQSSVSQHTQQPIALATQQMSGTSGSQNQVPVTKQMENPMQIASAAAQMAPSQIPNLLSHPISSASQPPLARPQMPTVSSQLQQPGQTPILPHMPLQPPLPPHPRLPSMPAFQHQHPSQMGSSMGFQQPGGQLHHSQPVFHSGTQPNASIGPSFTQAQPPLPSQLPSQSFNQIGGSHLRTEFSNPAGSSMQADRGSSAWMPPRHESTMGTQIPGPPPLVPGFGPSNPPPRPPMLNPEMEKALLQQVMSLTPEQINCLPPEQRHQILQLQQMLRQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0340 350 MobiDBLite consensus disorder prediction 167 184 - -
Vvi17g0340 350 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 121 350 - -
Vvi17g0340 350 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0340 350 MobiDBLite consensus disorder prediction 188 271 - -
Vvi17g0340 350 MobiDBLite consensus disorder prediction 132 275 - -
Vvi17g0340 350 Pfam Transcription termination and cleavage factor C-terminal 316 350 IPR026896 GO:0031124
Vvi17g0340 350 FunFam Cleavage stimulation factor subunit 2 310 350 - -
Vvi17g0340 350 Gene3D - 311 350 IPR038192 -
Vvi17g0340 350 MobiDBLite consensus disorder prediction 132 166 - -
Vvi17g0340 350 Pfam Hinge domain of cleavage stimulation factor subunit 2 20 67 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0340 Vvi-Chr17 3562384 3570139 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0340 - - vvi:100261251 604.364