Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0339 ATGTCAGACAGGCCAATTGGCGCCGATGCTGCGCCGTCAAACTCCGACGAATTTCCCCAAATGTCCAGGGCTGAACTCTACGACATCATGTATAAGATGAAGATTCTGACAGATGAGAAGCCGCAACAAGCGCGGCAGATTCTTACTGATAACCCACAATTGACCCGATTTCTCTTTCAGGCACAAATAATGCTTGGAATGATGGGGTCCCCTCGTGAGACTCCAACCACCCAGCTACCAACACTGCAGCATCCTCAGCAAGCACAGACAGCTCAGCAGCCAAGTGCTCAGGCAGCTCTTCCATTGTCAGGTGAAGCTTCTTTACAGGAACAAACAAGTGGATCTCAAACCCAAGTGCCTGTAATGAAACAAATGGAAATCCAACCTGCAATGCAAGCATCTGCTTCTATTCCTACCACCAACCCTCAGTCACAATCTATGCCCTTGCATCCGCTACAGACAGTGCAGCAGCCTAAGGGACATCTGAATATCCAAATGGCTCCCTCTCAAATTCTTAATACACCTCCACTTCCTACTAGTTCTGCTTCACAGCCGCCCTTAGTTCGACCCCAGATGCCCACAGCCTCCAACCAGTTTCAACAACCATTACAAGCACCTATCATTCCACATATGCCTCTGCAACCACCATTGCCTCCGCATCCTAGACTTCCTTTGCCGCCAACTTTCCAACATCAGCACCCTTCACAAATGGGCTCCAATATGGCTTTCCAACAATCTGGCAGTCAGCTGCATCATTCTCAGCCTGTGTTTCATTCAGGTAGCAAGCCTAATGCTGGTATTGGGCCTTCATTTACACAGGCACAGCCACAGATTCCAAATCAGCCACCATCTCAATCTTTTAATCAGATGGGAGGTTCACTTTTAAGGACAGAGTTCAGCAATGCTGCTGGAAGCTCCATGCAAGTGGACAGGGGATCTTCTTCTTGGATGCCGCCTCGGCATGAGAATACTATGGGAACACAGCTTCCGGGGCCACCACCATTAGTTCCTGGTCAGATGGGCTCGACCAATCCATCTCCCCGTCCCCAACTGTTAAATCCTGAGATGGAGAAGGCTCTGCTACAGCAGGTCATGAGCCTTACTCCAGAACAGATCAATCGGCTGCCTCCAGAGCAAAGGCATCAAATTCTACAATTGCAGCAGATGCTGCGGCAATGA 1179 0.4953 MSDRPIGADAAPSNSDEFPQMSRAELYDIMYKMKILTDEKPQQARQILTDNPQLTRFLFQAQIMLGMMGSPRETPTTQLPTLQHPQQAQTAQQPSAQAALPLSGEASLQEQTSGSQTQVPVMKQMEIQPAMQASASIPTTNPQSQSMPLHPLQTVQQPKGHLNIQMAPSQILNTPPLPTSSASQPPLVRPQMPTASNQFQQPLQAPIIPHMPLQPPLPPHPRLPLPPTFQHQHPSQMGSNMAFQQSGSQLHHSQPVFHSGSKPNAGIGPSFTQAQPQIPNQPPSQSFNQMGGSLLRTEFSNAAGSSMQVDRGSSSWMPPRHENTMGTQLPGPPPLVPGQMGSTNPSPRPQLLNPEMEKALLQQVMSLTPEQINRLPPEQRHQILQLQQMLRQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0339 392 MobiDBLite consensus disorder prediction 71 119 - -
Vvi17g0339 392 MobiDBLite consensus disorder prediction 170 190 - -
Vvi17g0339 392 FunFam Cleavage stimulation factor subunit 2 352 392 - -
Vvi17g0339 392 Pfam Hinge domain of cleavage stimulation factor subunit 2 20 67 IPR025742 -
Vvi17g0339 392 Gene3D - 353 392 IPR038192 -
Vvi17g0339 392 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 392 - -
Vvi17g0339 392 Pfam Transcription termination and cleavage factor C-terminal 358 392 IPR026896 GO:0031124
Vvi17g0339 392 Gene3D - 5 96 - -
Vvi17g0339 392 MobiDBLite consensus disorder prediction 244 289 - -
Vvi17g0339 392 MobiDBLite consensus disorder prediction 69 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0339 Vvi-Chr17 3553124 3561256 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0339 - - vvi:100255879 681.789