Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0338 ATGTCGGGAAAGGAAGGGCCTAGTGAGGGAACGCCGTCAGAAAACCTGGAAGTAGCCAGAATGTCTAGGACGGAACTCTACCATATAATGGCTGAAATGAAGGCGCTGACCGACCAGAACCCTCAACAAGTACGCCAGATTTTAGCTCAAAACCCGGCTCTGGCCCGGTCCCTGTTCCAGGCCCAAATCATGCTTGGGATGCTGCACCCACCGGACGAGCCTCATCAACAATTCCATGAGGCTCAGCCATCACAGCCCATGCCGCAGCCCCATCAACACTTGCAGCCCATGCAGCCTACGCCTCCACAGCCCCACACTGAGCCAGAGCCTAAGAAACCAAATGCTAAACCGTGGTAG 357 0.5546 MSGKEGPSEGTPSENLEVARMSRTELYHIMAEMKALTDQNPQQVRQILAQNPALARSLFQAQIMLGMLHPPDEPHQQFHEAQPSQPMPQPHQHLQPMQPTPPQPHTEPEPKKPNAKPW* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0338 118 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0338 118 Pfam Hinge domain of cleavage stimulation factor subunit 2 18 68 IPR025742 -
Vvi17g0338 118 Gene3D - 11 73 - -
Vvi17g0338 118 MobiDBLite consensus disorder prediction 67 118 - -
Vvi17g0338 118 MobiDBLite consensus disorder prediction 89 108 - -
Vvi17g0338 118 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0338 Vvi-Chr17 3548321 3549229 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0338 - - vvi:104882343 193.356