Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0336 ATGGCCTTCGCAACTGCAAAATTAACGGAGTTTCCTTTCACCTCTCACTCATCCTCTCTCCACTTCCTCTTCCCTAAAACCCCCCTATCTCTCCTTAAACCCTTCTCTTCGCTCCGGACCACTGACTCCAACAACCTCAGAAACCGTAAAACTAAACGATCCCTTTATCCTTGGGACCATCAAAACTCTCGAAAAAGCTCTAACACTAATCCTAATTCTAGTACCAAATCTTGGATTAACAAATGGCCTTCTCCCAATCCTTCGATTGAGTCAGAACACAAAGGCATTGATTCTAAGGGTAGGGATGGGACGGAGAGTCGGTATTTCGATGGGCGGAGCGGGACTAGTGCGATAGAGAGGATTGTGCTCCGGTTGCGGAATCTAGGGTTGGGTTCGGATGATGAGGATAAGAATGAGGGGGAAGTGGAGAGTGGTGATACAATGCCAGTGACCGGGGACGAGAAATTGGGGGATTTGTTGCAACGGGATTGGGTGCGACCCGATAGTATGTTGATTGAGGATGAGGATGAGGATGACATGATTTTGCCATGGGAGAGGGGAGAGGAGCGGCAAGAAGAGGAGGGAGATGGGAGATTGAAGAGGAGGGCAGTCAGGGCGCCAACGTTGGCGGAGCTGACAATTGAGGACGAGGAGCTGAGGAGATTAAGGCGGCTCGGGATGACAATAAGAGAGAGGATTAATGTGCCCAAGGCAGGCATTACACAAGCGGTTTTGGGGAAGATTCATGAGAAGTGGAGGAAGGAAGAGTTGGTGCGGCTTAAATTTCATGAGGCTCTTGCGCATGATATGAAGACAGCCCATGAGATAGTCGAGCGTCGTACTGGAGGATTAGTTACATGGAGGTCAGGAAGTGTTATGGTAGTGTTTCGGGGAACCAACTATGAAGGTCCTCCTAAACCCCAGCCTGTTGATGGAGAAGGTGATTCTCTTTTTGTGCCAGACGTTTCTTCTGTTGACAATCCGGCAATGAGGAATGATAACAATGGTGGTCCTACTTTAGAAAAGGGCTCTTTGCCTGTCAGGAATCCAGTCCATGCTGAGAACATGACAGAAGAGGAAGCTGAATATAACAGCCTATTAGATGGTTTGGGTCCTCGTTTTGTTGATTGGTGGGGTACAGGAGTATTGCCTGTTGATGGTGATTTACTCCCACAAAGTATCCCTGGCTACAAAACACCGTTAAGAATTCTTCCAACAGGAATGCGGCCACGGCTGACCAACGCAGAGATGACTAATTTACGGAAGCTAGCGAAATCACTTCCTTGTCATTTTGCTCTTGGGAGAAATAGAAACCACCAAGGGTTGGCTGCTGCTATTATAAAGCTTTGGGAGAAAAGCATAGTTGTGAAAATTGCTGTCAAACCAGGAATCCAGAATACAAACAATAAGTTAATGGCTGAGGAAATAAAGAACCTAACAGGAGGAGTGTTACTGCTTAGAAACAAATATTACATTGTCATATATCGTGGAAAGGATTTCCTTCCAACAAGTGTTGCTGCTGCTCTGTCAGAAAGAGAGGAATTGACTAAACATATTCAAGTTGTTGAAGAGAAAGTGCGGACTGGAGGAGCAGAGGCAATTCCATCTGGTGAAGATGGAGTCGGACAGCCTCTTGCAGGTACATTAGCAGAGTTTTATGAGGCTCAAGCTCGATGGGGAAGAGAAATATCTGCAGAAGAACATGAGAAGATGATAGAAGAAGCTTCTAGAGCTAAGAGTGCAAGGGTAGTAAAGCGTATTGAGCATAAACTAGCCCTTGCCCAAGCCAAAAAGCTAAGAGCAGAGAGACTATTAGCTAAGATAGAAGCATCCATGATTCCTGCTGGTCCTTCTGATGACCAGGAAACAATAACTGATGAGGAGCGGTTTATGTTTCGCAGGCTTGGTTTAAGAATGAAGGCATACTTGCTTCTTGGTGTTCGTGGTGTTTTTGATGGTGTTATTGAGAATATGCATTTACATTGGAAGCATAGAGAACTTGTGAAGCTAATCTCCAAACAAAAGACCCTCGCATTTGTTGAAGACACAGCAAGATTATTGGAATATGAGAGTGGTGGGATACTAGTGGCAATAGAAAGAGTTCCAAAAGGTTATGCCCTTATTTATTATCGTGGAAAGAATTATCGACGACCTGTTAGCCTGAGGCCAAGAAACCTTCTAACCAAGGCAAAAGCATTAAAGCGATCAGTGGCCATGCAGCGCCATGAGGCTCTCAGTCAGCACATATCTGAACTGGAGAGAACCATAGAGCAAATGAAAATGGAAATAGGAGATTCTAAAGATGCAGAGGATAAGGATTCCTGGAGCACAGAAGGCCATGGCCAGTTCGATCAAGTTTCAGAGAGTGAAGATGAAGCTTCAGGCATGGATTCTGATGCTGATGATGTTGAAGACATTGACTGGAAGGATGATGAAGAGTCCGGCATTTCACGCTTCAAGAATCATGATGATCTTTCCAGCATAAAGTTTTAA 2493 0.4521 MAFATAKLTEFPFTSHSSSLHFLFPKTPLSLLKPFSSLRTTDSNNLRNRKTKRSLYPWDHQNSRKSSNTNPNSSTKSWINKWPSPNPSIESEHKGIDSKGRDGTESRYFDGRSGTSAIERIVLRLRNLGLGSDDEDKNEGEVESGDTMPVTGDEKLGDLLQRDWVRPDSMLIEDEDEDDMILPWERGEERQEEEGDGRLKRRAVRAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFRGTNYEGPPKPQPVDGEGDSLFVPDVSSVDNPAMRNDNNGGPTLEKGSLPVRNPVHAENMTEEEAEYNSLLDGLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIKNLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVRTGGAEAIPSGEDGVGQPLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEIGDSKDAEDKDSWSTEGHGQFDQVSESEDEASGMDSDADDVEDIDWKDDEESGISRFKNHDDLSSIKF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0336 830 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 37 799 IPR045278 GO:0000375|GO:0003729
Vvi17g0336 830 FunFam CRS2-associated factor 1, chloroplastic 213 308 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 328 347 - -
Vvi17g0336 830 Coils Coil 584 611 - -
Vvi17g0336 830 Gene3D - 411 505 IPR035920 -
Vvi17g0336 830 Gene3D - 623 726 IPR035920 -
Vvi17g0336 830 Gene3D - 212 308 IPR035920 -
Vvi17g0336 830 ProSiteProfiles CRM domain profile. 622 722 IPR001890 GO:0003723
Vvi17g0336 830 Pfam CRS1 / YhbY (CRM) domain 215 297 IPR001890 GO:0003723
Vvi17g0336 830 Pfam CRS1 / YhbY (CRM) domain 412 496 IPR001890 GO:0003723
Vvi17g0336 830 Pfam CRS1 / YhbY (CRM) domain 625 710 IPR001890 GO:0003723
Vvi17g0336 830 ProSiteProfiles CRM domain profile. 212 308 IPR001890 GO:0003723
Vvi17g0336 830 MobiDBLite consensus disorder prediction 60 87 - -
Vvi17g0336 830 SUPERFAMILY YhbY-like 623 720 IPR035920 -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 92 108 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 764 778 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 790 810 - -
Vvi17g0336 830 SUPERFAMILY YhbY-like 213 307 IPR035920 -
Vvi17g0336 830 SUPERFAMILY YhbY-like 412 503 IPR035920 -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 45 59 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 130 154 - -
Vvi17g0336 830 Coils Coil 742 769 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 40 111 - -
Vvi17g0336 830 MobiDBLite consensus disorder prediction 764 830 - -
Vvi17g0336 830 Coils Coil 505 525 - -
Vvi17g0336 830 FunFam CRM-domain containing factor CFM3B, chloroplastic 623 725 - -
Vvi17g0336 830 ProSiteProfiles CRM domain profile. 410 507 IPR001890 GO:0003723
Vvi17g0336 830 MobiDBLite consensus disorder prediction 811 830 - -
Vvi17g0336 830 FunFam CRS2-associated factor 1, chloroplastic 411 507 - -
Vvi17g0336 830 SMART CRS1_YhbY_2 624 711 IPR001890 GO:0003723
Vvi17g0336 830 SMART CRS1_YhbY_2 214 297 IPR001890 GO:0003723
Vvi17g0336 830 SMART CRS1_YhbY_2 412 496 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0336 Vvi-Chr17 3531171 3538891 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0336 - - vvi:104882345 1574.68