Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0335 ATGGTCGGAAGAAGGAGGAGAGTTTTCAATGTGAGTGAGGCTATAGAATTCTTGAACCAGCTGTTGGTGGACAACCCACTTCTTCCTTTTTTGATTCCGGTGGTTTTGGTTGTCTGGGCTGTAGAGAGATGGATTTTTTCCCTCTCCAACTGGGTTCCACTTGTGGTGGCTGTATGGGCTACAATTCAGTATGGAAGTTATAAAAGACGAATCCTTGTGGAGGACTTGAATAAAAAATGGAAGCAAGTCATAGTAAACAAATCGCCGATAACACCAATAGAGCACTGTGAATGGCTGAACAAACTGTTGATGGAAATTTGGCCCAACTACTTGAACCCAAAGCTTTCATTAAGGTTCTCATCTATTGTTGAGAAACGCTTAAAGCACCGAAAATCAGGGCTCATTGAAAAAATCGAACTACAGGGGTTTTCGCTAGGTTCAAGCCCACCTGTTTTGGGCCTCCATGGGACTCAGTGGTCTGCTACAGGTGATCAGAAAATCATGCGCTTGGGTTTTGACTGGGACACCACCGACTTAAGTATCATGTTGCTTGCTAAATTAGCCAAGCCACTGCTTGGTACTGCTCGGATTGTTATAAATAGCCTCCACATCAAGGGTGATCTCCTCTTGATGCCAATTCTGGATGGAAGAGCATTTCTATACTCATTCATATCACCTCCTGAAGTGAGAATTGGCGTTGCATTTGGAAGTGGTGGCAGCCAATCACTACCTGCAACAGAACTTCCCGGTGTTTCTTCTTGGCTGGTTAAACTTTTTACTGATACCCTAGTTAGGACAATGGTTGAACCTCGCCGCCGTTGTTACTCTCTGCCAGCAGTAGATTTAAGGAAAAAGGCAGTTGGTGGTGTTATTTATGTTACAGTCATCTCAGCAAGTAAACTTTCTAGGAGTAGCCTGAAAGGAAGTCCTCTTAGAAGGCAACAAAGCTGCAGTATAGATGGTATTTCAGAAGAGCACCTTGATGATAAATATTTGCAGACCTTTGTTGAGGTTGAACTTGGAGAGCTGACCAGGAGAACTGATGTGAGAGTTGGCTCCAGCCCCCGATGGGATTCATTATTTAATATGATTTTACATGAGGACACGGGAACTCTCCGATTCCAGCTTTATGAAAGTACACCAAGCAATGTGAAGTATGACTACCTAGCAAGTTGTGAAATTAAGATGAAATATGTTGCCGATGATTCCACAGCATTTTGGGCAATAGGATCTGAATCCAGTGTAATAGCCAAGCATGCCGAGTTCTGTGGAAAAGAAGTTGAAATGGTTGTCCCATTCGAGGGTGCTAATTCAGGAGAGTTGATGGTGAGACTTGTGGTGAAGGAATGGCAGTTTACTGATGGTTCACATAGCTCGAATAATTTCCGTGTTAGCCCTCAACAATCACTCTATGGTTCATCAAATTTTGCCTCAGGAACTGGGAGGAAAATCAATATAACTGTTGTGGAAGGAAAAGATCTTATTGCAAACAAATCTGGAAGGTGTGACCCATATGTGAAGCTGCAGTATGGGAAGGTCCCACAGAGAACAAGGACTGTCCCACATTGTTCAAGTCCTACCTGGAATCAGAAGTTTGAATTTGATGAAATAGGAGGTGGTGAATATCTTAAGATTAAATGCTTTAATGAAGAAACATTTGGAGATGACAACATTGGTAATGCACGAGTAAGTTTGGAGGGACTTGTAGAAGGCTCAATAAGGGATGTGTGGGTCCCCCTTGAGAAAGTAAATACAGGAGAACTAAGGCTCCTATTAGAAGTGGTTGCAAATGCAGGTTCGGGAAATGGTTGGGTTGAACTTGTTCTTGTAGAAGCAAGAGATCTAATTGCTGCGGATCTCAGAGGAACAAGTGATCCATACGTGAGGGTTCAGTATGGAAGCCTAAAGAAAAGAACTAAGGTTATGTTCAAAACTCTGAATCCTCAATGGAACCAGACCTTAGAGTTCCCTGATGATGGTAGCCCCTTGGAATTGCATGTAAAAGACCACAATGCCTTACTACCCACGTCCAGTATAGGTGATTGTGTCGTAGAATATCAGAGATTACCTCCAAACCAGATGGCGGATAAGTGGATACCCCTACAAGGGGTAAAAAGGGGAGAGATTCATGTTCAAATTACAAGAAAAATTCCAGAAATACAGAGGAGACCCAGTCTTGAATCTGAACCATCATCCTTAATTAAAGCACACCAAGTTTCTAGCCAGATGAAACAAATGATGAACAAGTTAGAAACCCAAATCGAGGATGGCAACCTTGAAGGACTTTCAGCAGTAGTAAGTGAGCTGGAGAGCCTGCAGGATACGCAGGAAGAGTACATGGTTCAACTCGAGACGGAGCAAATGCTGCTGCTCAATAAGATAACAGAGCTCGGTCAGGAATTTTTTAACTCACCACCCTCCCTCAGAAGAAGATCTTCCCATGACTGA 2448 0.4301 MVGRRRRVFNVSEAIEFLNQLLVDNPLLPFLIPVVLVVWAVERWIFSLSNWVPLVVAVWATIQYGSYKRRILVEDLNKKWKQVIVNKSPITPIEHCEWLNKLLMEIWPNYLNPKLSLRFSSIVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATGDQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSFISPPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLRKKAVGGVIYVTVISASKLSRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGELTRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDSTAFWAIGSESSVIAKHAEFCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFRVSPQQSLYGSSNFASGTGRKINITVVEGKDLIANKSGRCDPYVKLQYGKVPQRTRTVPHCSSPTWNQKFEFDEIGGGEYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEKVNTGELRLLLEVVANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQYGSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHVQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLETQIEDGNLEGLSAVVSELESLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRSSHD* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0335 815 CDD SMP_SF 115 275 - -
Vvi17g0335 815 ProSiteProfiles C2 domain profile. 584 699 IPR000008 -
Vvi17g0335 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 601 714 IPR035892 -
Vvi17g0335 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 403 IPR035892 -
Vvi17g0335 815 SMART C2_3c 604 698 IPR000008 -
Vvi17g0335 815 SMART C2_3c 483 577 IPR000008 -
Vvi17g0335 815 SMART C2_3c 290 408 IPR000008 -
Vvi17g0335 815 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 484 595 IPR035892 -
Vvi17g0335 815 ProSiteProfiles C2 domain profile. 465 578 IPR000008 -
Vvi17g0335 815 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 92 278 IPR031468 GO:0008289
Vvi17g0335 815 Pfam C2 domain 606 701 IPR000008 -
Vvi17g0335 815 Pfam C2 domain 483 580 IPR000008 -
Vvi17g0335 815 Pfam C2 domain 291 398 IPR000008 -
Vvi17g0335 815 CDD C2 605 701 - -
Vvi17g0335 815 Gene3D C2 domain 473 597 IPR035892 -
Vvi17g0335 815 Gene3D C2 domain 598 716 IPR035892 -
Vvi17g0335 815 Gene3D C2 domain 288 443 IPR035892 -
Vvi17g0335 815 PANTHER OS01G0128800 PROTEIN 7 811 - -
Vvi17g0335 815 CDD C2 291 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0335 Vvi-Chr17 3518070 3530121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0335 484 750 Lipid Metabolism Gene Families AT3G57880 24.214 2.49e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0335 - - vvi:100262742 1624.76