Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0324 ATGCGGCCTTCTTCGGGAGGAATCAACATCGCCGCCAGTGCTCAGAAACTCGATGTCGATAATCGGATTTCCCTCCGTTACTACTACCGTATCGCTGATAATATCCTCAAACAGGCTGACATATTTCGAGAAGAGAAGAACATTATAGATCTCTATATTATGCTTCTAAGGTTTTCAAGTTTAACTTCTGAGACTATACCATGCCATCGTGATTATAAGGCATCTCTACAAAGCAAAAAGAATTATTTGAAGAAGAACTTATTGAGAGCCCTGTGTGAGTTGGAGGAATTGAAGCCAGCTGTGCGACAGAAGATTGATGAATTGAACCAGAAACATACATATCAAGTAAACAGATGGGGTGCTGATTCCTCACTGGAATGGCCTCATGTTAGGAAACAAACTTTGACGAAACATGAGATGACAAAGACACCACGACCCACTGCTCGAGATTTTGAATATCAAGGTTCAAAGATTCAGCAGTTCTCGCGAGCCAAGCCAGTGGAAGAGCAATTCCGCAGACTATCTGTTGGTATCCTGCGCCCAAGGGAGGAAACTCTATCCAGACACTCTATTTTGGGTCCAAATGGACTTCATGGGCAGTGGCAGCCACCTACCATTGATAAAAGGGTCCAATATCCAAGCAATTTAGATTTGACTCCAGTTCAATTTCCAAGTCTGCAGCATCATGTGGAGGATGGACTTATGAATAACAATGAAGCTAGCAGCTCAGAACATGAGCAATCTAGTTTGGAATCAGTCCTTACACTGAACGAGGATAATCAGATTCATCCTGCTGAGGAACTGGGTTCCTTGATTTCTTTTGAAACCACAGAAACTCCTCATACAGAGATTATCAGACAGCCTTCTCCTCCACCTGTTCTGGCAGACGTACAAGATTTGATCCCAGAGACTCCCACCCAAGTTAGTGAGGTAAATGGCCAAATGGAGACCCCATCAACGGATGGGTTAGTTTGTTCTGAAGCTCCCCTCGAAATGCACATTTCAACTGTATTGATGGAAAGCTTCTTGAAGCTTGCTAAGTCGAACACTGTCAGGAATTTGGAAACTTGTGGTATCCTTGCAGGTTCACTTAAGAACAGAAAATTTTATGTCACAGCTCTCATTATTCCGAAGCAGGAGTCAACATCAGATTCATGTCAGACCACAAATGAAGAGGAAATTTTTGAAGTGCAGGATAAGCAATCCCTCTTCCCTCTTGGGTGGATACATACTCATCCTACCCAGTCGTGTTTCATGTCTTCTGTTGATCTTCATACCCATTACTCATATCAGACTATGCTACCGGAAGCCATAGCAATTGTCATGGCACCAAAGGATGCTTCAAAAAAGCATGGCATTTTCCGCCTGACAACTCCAGGTGGCATGTCAGTCATAAGACACTGCGACCAACGTGGCTTTCATCCACATCATTCTCCTTCGGATGGTGGGCCCATCTACAAAAGCTGTACAGATGTTTATATGAATCCCAATATACATTTTGATGTCATTGATCTTCGGTGA 1521 0.4326 MRPSSGGINIAASAQKLDVDNRISLRYYYRIADNILKQADIFREEKNIIDLYIMLLRFSSLTSETIPCHRDYKASLQSKKNYLKKNLLRALCELEELKPAVRQKIDELNQKHTYQVNRWGADSSLEWPHVRKQTLTKHEMTKTPRPTARDFEYQGSKIQQFSRAKPVEEQFRRLSVGILRPREETLSRHSILGPNGLHGQWQPPTIDKRVQYPSNLDLTPVQFPSLQHHVEDGLMNNNEASSSEHEQSSLESVLTLNEDNQIHPAEELGSLISFETTETPHTEIIRQPSPPPVLADVQDLIPETPTQVSEVNGQMETPSTDGLVCSEAPLEMHISTVLMESFLKLAKSNTVRNLETCGILAGSLKNRKFYVTALIIPKQESTSDSCQTTNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSVDLHTHYSYQTMLPEAIAIVMAPKDASKKHGIFRLTTPGGMSVIRHCDQRGFHPHHSPSDGGPIYKSCTDVYMNPNIHFDVIDLR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0324 506 SMART pad1_6 331 459 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi17g0324 506 CDD MPN_AMSH_like 333 506 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vvi17g0324 506 FunFam AMSH-like ubiquitin thioesterase 3 317 506 - -
Vvi17g0324 506 SUPERFAMILY JAB1/MPN domain 332 462 - -
Vvi17g0324 506 Gene3D Cytidine Deaminase, domain 2 322 506 - -
Vvi17g0324 506 FunFam AMSH-like ubiquitin thioesterase 3 4 120 - -
Vvi17g0324 506 PANTHER AMSH-LIKE PROTEASE 3 506 - -
Vvi17g0324 506 Gene3D - 1 122 - -
Vvi17g0324 506 ProSiteProfiles MPN domain profile. 332 462 IPR037518 -
Vvi17g0324 506 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 330 435 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi17g0324 506 Pfam USP8 dimerisation domain 11 103 IPR015063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0324 Vvi-Chr17 3362134 3388444 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0324 K11866 - vvi:100264578 1011.52