Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0323 ATGGCTTCCAGACTCCTCCAAACCCTCAAAACTACCAGTCCCACCTGCCGCCTCCTCAGCCACCTTTCTACGGCTACAGCGGCGGTGGCGGCGAAGGAATCGTACGAGGATGCAGATGGGATTAGCATGAAAGGGGTTAAAATTTCTGGAAGGCCGCTTTACCTTGATGTGCAGGCAACATCTCCTGTGGACCCTAGGGTTCTCGATGCTATGCTTCCCTACTACCTCTCCAGCTTTGGGAATCCTCATTCCCGGACTCATCTCTACGGCTGGGAATCGGAACTCGCTGTCGAGAAGGCAAGGGCACAGGTGGCGGCGCTAATCAACGCCTCTCCTAAGGAGATTGTCTTCACCTCCGGCGCCACTGAATCCAACAACATTTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCACGTCATCACTACGCAAACGGAGCACAAGTGTGTTCTTGACTCCTGCCGCCATTTACAGCAGGAAGGTTTCGAGGTTACGTACCTTCCGGTAGGGTCTGATGGGATTGTTGATATTGATCAAATTCGGTCCGCGATTAGGCCCGATACAGGGCTCGTGTCGGTGATGGCGGTGAATAATGAGATTGGCGTGATTCAGCCGATTGAAGAAATAGGGAAGATGTGTAAAGAGTTGGGTGTTCCTTTTCATACTGATGCGGCTCAGGCTTTGGGCAAAATTCCGATTGACGTGGAGAAGATGAATGTGAGTTTGATGTCTTTGAGTGGGCACAAGATTTATGGGCCCAAGGGAGTTGGGGCCTTGTATATGCGGCGTAGGCCAAGGATTAGGGTTGAGCCGCAGATGAATGGTGGTGGGCAAGAAAGGGGAATTCGCAGTGGGACAGTCCCAACTCCGCTGGTTGTGGGAATGGGCGCAGCATGTGAGCTGGCAATGAAAGAAATGGAGTATGACGATGAGCGAATCACTGCTTTGCAAAAAAGGCTGCTTAACGGGATCAACGCAAAACTTGATGGTGTGGTGGTAAATGGGAGTAGGGAGAGGAGGTATGCTGGGAATTTGAATTTGTCTTTTGCTTACGTTGAAGGGGAGAGTTTGCTAATGGGGTTGAAGGAAGTGGCAGTTTCCAGTGGGAGTGCATGCACAAGTGCAAGTTTGGAGCCCTCATATGTTCTAAGGGCGTTGGGGGTGGATGAGGATATGGCTCATACCTCTATTAGGTTTGGGATTGGGAGGTTTACCACAGACGCTGAAATTGATAGGGCTGTGGAACTCACGGTGCAGCAGGTGGAGAAATTGAGAGAAATGAGCCCACTCTATGAAATGGTGAAGGAAGGAATTGATATTAAAAGTATACAATGGGCACAACACTGA 1356 0.5052 MASRLLQTLKTTSPTCRLLSHLSTATAAVAAKESYEDADGISMKGVKISGRPLYLDVQATSPVDPRVLDAMLPYYLSSFGNPHSRTHLYGWESELAVEKARAQVAALINASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVGSDGIVDIDQIRSAIRPDTGLVSVMAVNNEIGVIQPIEEIGKMCKELGVPFHTDAAQALGKIPIDVEKMNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGAACELAMKEMEYDDERITALQKRLLNGINAKLDGVVVNGSRERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTDAEIDRAVELTVQQVEKLREMSPLYEMVKEGIDIKSIQWAQH* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0323 451 PIRSF NifS 51 431 IPR016454 -
Vvi17g0323 451 Gene3D Aspartate Aminotransferase, domain 1 54 415 IPR015422 GO:0003824
Vvi17g0323 451 PANTHER CYSTEINE DESULFURYLASE FAMILY MEMBER 44 431 - -
Vvi17g0323 451 SUPERFAMILY PLP-dependent transferases 52 438 IPR015424 -
Vvi17g0323 451 Hamap Cysteine desulfurase IscS [iscS]. 49 442 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g0323 451 FunFam Cysteine desulfurase IscS 64 309 - -
Vvi17g0323 451 FunFam Cysteine desulfurase IscS 301 415 - -
Vvi17g0323 451 Pfam Aminotransferase class-V 54 415 IPR000192 -
Vvi17g0323 451 NCBIfam IscS subfamily cysteine desulfurase 51 451 IPR010240 GO:0030170|GO:0031071|GO:0044571
Vvi17g0323 451 Gene3D - 64 309 IPR015421 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0323 K04487 - vvi:100249131 886.715