Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0317 ATGTCTCCCTCCTCACCACTCATCAGTTCCGTAAGGACCTCAACTCCGCCAACCCCTTCGAGCTCCAAGCCTTCCATTGGAAAAAAGGCTGTGGCGGTCATTTTGAGGGTTTTTAGCCAGTACCCAGATGCGGCTAGGGTTTGTTTTAAGCGTTTGGTTGAGAATTTAGAGAGTTCTGATCCGCATACCTTGTCTGCGGCAATGGGTGTTTTTTGCGAGTTGGCAGTGAAGGACCCTAAATCATATCTGCCCCTGGCGCCAGAGTTTTATAGGATATTGGTGGATTCTAGGAACAATTGGGTATTAATTAAGGCGGTTAAGATATTTGGGAAGTTAGCACCATTGGAGCCAAGGTTGGCAATGAGGGTTGTGGAGCCAATTTGTGAGTATATGAGGAAAACCGGGGCAAAATCATTGATGTTTGAGTGTGTGAGGACTGTGGTGACTAGCTTGGCCGAGTATGAGTCTGCAGTGAAGCTTGCAGTTGTGAAGATTCGGGAATTGTTAGTGGATGATGATTCTAATCTTAAGTACCTAGGGTTGCAGGCGCTGACAGTTGTTGCACCAAAGCACCTGTGGGCGGTTTTGGAGAATAAGGAGGTGGTGATTAAATCTTTGAGTGATGCTGACCCCAATATTAAACTTGAGTCACTGCGCATTCTGATGGTAATGGTGTCTGAGAGAAATGTGGCTGAAATTTCCAGGGTTTTGGTTAATTATGCAATTAAATCAGACCCAGAGTTTTGCAATGAGATTCTGGGTTCCATTTTATCAGCTTGTTCTAGGAATGTTTATGAGATAATTGAGGACTTTGATTGGTATGTATCACTTCTTGGGGAAATGTCGAGGATTCCACATTGCCAGAAGGGTGAAGAGATTGAGCATCAACTTATTGATATTGGTATGAGGGTGAAGGATGCTAGACTGCAGCTTGTTCGTGTTGGCCGGGATCTACTGATTGATCCTGCATTACTTGGTAACCCTTTCTTACACAGGATATTGTCTGCTGCTGCTTGGGTTTCAGGGGAGTATGTTGAATTTTCGAAGAATCCATTTGAACTTATGGAGGCTCTGTTACAACCACGTATTAGTCTCTTGCCTCCATCAATAAGGGCTGTTTATGTTCAGTCTGCTTTTAAAGTACTTATCTTTTGTCTACATTCCTACCTCTTTTACAGGGAAACCATTGCTTGCTCCCCCTCATCTCCTGACAATTTTGTCTCTGAAAGTAAATGCCCAGGTTCTGATTCTGCAATTGTTGCAGCTGATTGCCAACAAGATGAAGTGTTCAACCCAAGGGCTTCAAATCAATCCTTTGAAGATGCTTCTACAGAAGATGTTGAAGATATAACTGTTACTCATGCTCAGATACCTAATTCAGCCTCTTTAGGAAAAGATGGTTTCACACATGAATCAATTGGGAACCTGTTGAATCTAATTGAAGTGGCTTTGGGTCCACTATCAGGAAGCCGAGAAGTAGAAATACAGGAGAGGGCACGAAATGTACTTGGTTTAATTGAGTTGATAAAACAAGAGTTACCTGGCTTAGTCAAGAAAGAAGGGAATTTTGAGAGGGAAGGCTTAAAATTTCCCAAAATCATTGAGTTAATGCATGATGCATTCTCCAAGGAGCTTGGTCCAGTCGCAGCAAATGCGCAAGAAAGAGTTCCTATCCCTGATGGGCTAATACTTAGGGAGAATCTTGGTGACTTGGAAATGATTTGTGGCAATGATCAGCTGCCTACATCAAGTTCATTTTCTTTTGGAATTCCTCATTCTAAGGAGAAGGTTGGTCTTCCCCAAAGCAAAGGAGAATCATCTGAAGCATCAACTGAGTCGACATCTCTGCTTGCAGAACACCGCAAGCTTCATGGACTATATTATCTTCCTTCAGAGAAGAATGATGTATCCAATGATTACCCACCTGCTAATGACCCTAAGTTGCAGGATAATCTGAATGATGATGCTAAAGATCTTGTTAAGCTTACAGAGCAGTCGCTTCTTCAAAAGAAAAAGCCAAACCATGCAAAACCTAGGCCGGTGGTGGTAAAATTGGATGAGGGTGATGAAGCACCTATTGCAGCCAAGAAGCTGGAGTTGAAAGAGGATTTGTTGTCTGGTGCGGTGCGAGATGTACTTTTAGGTAATGAAGCTGTATCCACTTCACAAAGTAATCTGACCGATAAATCATCCAGTAAGAGAAGAGGGAAGGAAAAACTAAATACTGATCATCCATCTGGTCCAAAAGAAGTTCTGGGTGATGTAGGAAATCCTAATATGGGAAATCCAAGTTCAAGAAGAAGCAAACACCATGGTCATGGTAAAGAGAGACGGCATAGAAGTCCGAGGAAGAAGGAGAAGGAAAGAGAAGAAAATGGTCAGAAAGACAAGCAGAAGAGTAGTCATCGTCATAATAGGCACAAATCTCGTCAAAGAGCGGAAGGGCCCAACAATGTGGTTACACAAACACCACTGATCCCGGATTTTCTTTTATAG 2496 0.4275 MSPSSPLISSVRTSTPPTPSSSKPSIGKKAVAVILRVFSQYPDAARVCFKRLVENLESSDPHTLSAAMGVFCELAVKDPKSYLPLAPEFYRILVDSRNNWVLIKAVKIFGKLAPLEPRLAMRVVEPICEYMRKTGAKSLMFECVRTVVTSLAEYESAVKLAVVKIRELLVDDDSNLKYLGLQALTVVAPKHLWAVLENKEVVIKSLSDADPNIKLESLRILMVMVSERNVAEISRVLVNYAIKSDPEFCNEILGSILSACSRNVYEIIEDFDWYVSLLGEMSRIPHCQKGEEIEHQLIDIGMRVKDARLQLVRVGRDLLIDPALLGNPFLHRILSAAAWVSGEYVEFSKNPFELMEALLQPRISLLPPSIRAVYVQSAFKVLIFCLHSYLFYRETIACSPSSPDNFVSESKCPGSDSAIVAADCQQDEVFNPRASNQSFEDASTEDVEDITVTHAQIPNSASLGKDGFTHESIGNLLNLIEVALGPLSGSREVEIQERARNVLGLIELIKQELPGLVKKEGNFEREGLKFPKIIELMHDAFSKELGPVAANAQERVPIPDGLILRENLGDLEMICGNDQLPTSSSFSFGIPHSKEKVGLPQSKGESSEASTESTSLLAEHRKLHGLYYLPSEKNDVSNDYPPANDPKLQDNLNDDAKDLVKLTEQSLLQKKKPNHAKPRPVVVKLDEGDEAPIAAKKLELKEDLLSGAVRDVLLGNEAVSTSQSNLTDKSSSKRRGKEKLNTDHPSGPKEVLGDVGNPNMGNPSSRRSKHHGHGKERRHRSPRKKEKEREENGQKDKQKSSHRHNRHKSRQRAEGPNNVVTQTPLIPDFLL* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0317 831 Pfam Adaptin N terminal region 21 375 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi17g0317 831 MobiDBLite consensus disorder prediction 783 798 - -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 632 652 - -
Vvi17g0317 831 PANTHER DELTA ADAPTIN-RELATED 20 830 IPR017105 GO:0015031|GO:0030123
Vvi17g0317 831 SUPERFAMILY ARM repeat 20 520 IPR016024 -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 766 782 - -
Vvi17g0317 831 Gene3D - 5 404 IPR011989 -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 1 25 - -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 585 615 - -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 730 745 - -
Vvi17g0317 831 MobiDBLite consensus disorder prediction 720 831 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0317 K12396 - vvi:100261087 1560.43