Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0309 ATGCATCTCATCTTCTCAGTTTTCATCTTCTTCCTCTCCCATCGCTTCCCAAAATCCGTGTCCACCGACGATGTTCAATTCTCAAACTGCAACCCTTCGTTCCAATGCGGTGGACTGGGCAAAATCGAGTACCCTTTTCTGGCTAGATGGCCACCAGCCCCGTCACGGTGGGCGTCCGGGGATCAGCCTGCATTGCCGGAATGGCGAGGCCACCATTGGGATCAGTACCGCGTCATCGACATCGATTACAACGCCCAAGTCCCAAAGATTGGTACAATCAATAATGGGTCGAAAGGGGCTTGTCCTCATCCCAACGCAACCATTGACCCATCTCTCATGAGCTACACTTCAAAGGTTGAGAACGACACCTTCTTATTCGATTGTTGGCAGTATGAAGATCATCCCGGATCTTACGGGTTCACCTGTGAGATGGATGACCTTCAACGCCCATCCTACTTTGTTGTAAACACATCTCTGGCAAATGAGCTTGGAAGCAAATGTGGGGAGAGAGTTGTCATCCCTGTTTTGGGAACTGCTGCTCAAACCCTTCTGAATCATTCATTAGGTGTGGATGGACTTTTAAGAGAAGGGTTTGAGGTTGAATGGGAAGTAGAGGAGGAAGAAGAATGCGGAGAATGCGTTGAATCTGGAGGTGGATGTGGATAG 666 0.4925 MHLIFSVFIFFLSHRFPKSVSTDDVQFSNCNPSFQCGGLGKIEYPFLARWPPAPSRWASGDQPALPEWRGHHWDQYRVIDIDYNAQVPKIGTINNGSKGACPHPNATIDPSLMSYTSKVENDTFLFDCWQYEDHPGSYGFTCEMDDLQRPSYFVVNTSLANELGSKCGERVVIPVLGTAAQTLLNHSLGVDGLLREGFEVEWEVEEEEECGECVESGGGCG* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0309 221 PANTHER OS01G0690200 PROTEIN 4 221 - -
Vvi17g0309 221 Pfam Wall-associated receptor kinase C-terminal 142 221 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0309 Vvi-Chr17 3235698 3236363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0309 5 221 Receptor kinase-like Gene Family AT5G38260 25.105 1.80e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0309 - - vvi:109124348 420.624