Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0305 ATGCATCCCAAGTTCTTCCCATCCACCCACTTCATCTCAATCCTCATCTTCCTCCTCTCCCATCACTTCCCAATATCGATCCGGTGTGAAGATTCTCCATATGTGAAATGCAATTTTCCCGTCCAATGTGATGATGAAGTGGGCAAAATTGTGTACCCTTTCTGGGTAGATGGGTACCAACCTGATTACTGTGGTCATCCGGCGTTCAAGCTCGACTGCATGGGATTTAAGGTCACCATAGAGATGATGCACGGAAAATATGATGTCATTAACATCAATTATGAGGCTCAAATCCTGACGATTGCCAGAGTCAATGAATTCTTCATTAAAGATATATTGTGTCCTGAACAGAATGCAACCATGGATTCCACCCTCTTCAAATACACTTCCAACACCCAGAATGCCACCCTGTTCTACAAGTGTCCCCCAGGGTTTGAACATCCCGCGACTTGGAAATTTATCTGTTTGAAATTCGGTGCTCTAGACTGTGCTTTTTTTGTGTTAAATACGTCCCTGGCCACTGAACTCGTAAGCATATGCGGGGCTGGTGTGGTCGTTCCGGTTCTTGCAACTGCTGCTCAGGGCTTTATGAATCATTCATTAGCTTTTGATCAAGTTCTGAAGGAAGGGTTTGAGGTGAAATGGACAGTAGAAGAGGGACAATGTCGAGGTTGTGCTGAGTCTGGAGGTAGATGTGGATATAATTTGAGTTCGAGCCAACCTAGTTGTTATTGTCCTGACAAACCTTATTCAACAAGCTGTCCAACTCTAAAGGCACCGCCACCGATTGCACCAACTCCAACTGCTTTGAATTCGCCAAAGTCAAGTGTAGTTCGAGAAATTCAAATTCGAATGATGCATGTTACATTGTTGAAATAA 879 0.4391 MHPKFFPSTHFISILIFLLSHHFPISIRCEDSPYVKCNFPVQCDDEVGKIVYPFWVDGYQPDYCGHPAFKLDCMGFKVTIEMMHGKYDVININYEAQILTIARVNEFFIKDILCPEQNATMDSTLFKYTSNTQNATLFYKCPPGFEHPATWKFICLKFGALDCAFFVLNTSLATELVSICGAGVVVPVLATAAQGFMNHSLAFDQVLKEGFEVKWTVEEGQCRGCAESGGRCGYNLSSSQPSCYCPDKPYSTSCPTLKAPPPIAPTPTALNSPKSSVVREIQIRMMHVTLLK* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0305 292 PANTHER OS01G0690200 PROTEIN 9 255 - -
Vvi17g0305 292 Pfam Wall-associated receptor kinase galacturonan-binding 42 102 IPR025287 GO:0030247
Vvi17g0305 292 Pfam Wall-associated receptor kinase C-terminal 174 248 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0305 Vvi-Chr17 3203819 3213765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0305 9 257 Receptor kinase-like Gene Family AT5G38260 26.866 3.14e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0305 - - vvi:104882352 577.015