Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0304 ATGGCTTCATCGACGGCTCAGATTCACGGTCTTGGAACTACTGGGTTCGCCTCATCGTCAGCGAAGCCAAAGCGTACATCATCTAGAACGGTGTTCTTTGGGCAGAGATTGAGCCCTAGTACAGCGTCTTTTGGTCTACCGAAGACCGCGTTCTTGAAGCTCAAAAGGAACTCGAGACGAGACTACTCGACGGGACCTGTTCGTGTGGTAAATGAGAAAGTGGTGGGAATCGATCTTGGCACCACGAACTCGGCGGTGGCGGCTATGGAGGGAGGGAAGCCGACGATAGTGACGAATGCCGAGGGGCAGCGAACAACGCCGTCGGTGGTGGCTTACACCAAGAACGGCGATAGGCTTGTTGGTCAGATTGCTAAAAGGCAGGCCGTGGTTAATCCCGAGAACACCTTCTTCTCCGTGAAGCGATTCATTGGGAGGAAGATGTCGGAGGTCGATGAAGAATCCAAGCAGGTGTCGTATCGGGTGGTAAGAGATGAAAATGGGAATGTCAAACTCGAGTGCCCAGCGATCGGGAAGCAGTTCGCGGCCGAAGAAATTTCGGCCCAGGTACTAAGAAAGCTTGTTGATGATGCCTCGAAGTTTCTGAATGATAAAGTCACAAAAGCTGTGGTCACAGTGCCTGCTTACTTCAATGACTCCCAGAGGACAGCAACAAAGGATGCTGGTCGCATTGCTGGATTAGAAGTTCTTAGGATCATCAATGAACCTACTGCTGCTTCACTGGCATATGGGTTTGAAAAGAAAAACAATGAAACCATTCTGGTATTTGACCTTGGGGGTGGTACTTTTGATGTCTCAGTTCTCGAGGTTGGCGACGGAGTGTTTGAGGTGCTTTCCACTTCAGGAGATACACATTTGGGTGGTGACGACTTTGACAAGAGAGTTGTGGATTGGTTGGCTGCAAGTTTTAAGAAAGATGAGGGTATAGATCTTCTCAAGGACAAACAAGCTCTTCAGCGTCTAACAGAGACAGCTGAGAAGGCAAAAATGGAGCTATCATCCTTGACACAGACAAATATTAGCTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGGCTTAAAACACCAGTTGAAAATTCTTTGAGGGATGCAAAACTGTCCTTCAAAGATCTTGATGAGGTGATCCTTGTTGGTGGATCAACACGTATCCCTGCTGTTCAGGAGCTTGTAAAGAAAATGACAGGAAAGGACCCCAATGTCACAGTCAATCCGGATGAAGTCGTCGCCCTAGGGGCTGCTGTGCAGGCTGGTGTTTTGTCTGGAGATGTCAGTGACATTGTGCTCTTGGATGTGTCTCCATTGTCTCTGGGTCTAGAGACATTGGGTGGTGTAATGACAAAAATCATCCCAAGAAACACAACATTGCCCACCTCCAAATCAGAGGTGTTCTCAACAGCAGCAGATGGACAGACTAGTGTTGAGATCAATGTACTTCAAGGTGAGAGAGAGTTTGTAAGAGACAATAAGTCTCTAGGCAGCTTCCGACTGGATGGTATCCCTCCTGCACCGCGGGGAGTTCCTCAGATTGAAGTCAAATTTGACATTGATGCCAACGGCATTCTTTCTGTCACTGCTATTGACAAAGGCACAGGGAAGAAACAAGACATCACCATTACAGGTGCTAGCACCTTGCCCACTGATGAGGTGGAGAGGATGGTTAGCGAAGCAGAGAGGTTTGCAAAGGAGGACAAGGAGAAGAGAGATGCCATAGATACAAAGAATCAAGCTGATTCTGTGGTCTACCAGACAGAAAAACAGCTGAAGGAGCTGGGAGATAAGGTTCCTGCCCAAGTTAAAGAGAAGGTTGAGGCAAAACTTGGGGAGCTGAAGGATGCAATCTCAGGAGGGTCGACCCAGGTCATGAAGGATGCCATGGCTGCCCTGAACCAGGAAGTTATGCAGCTGGGTCAGTCCCTTTATAACCAGCCAGGTGCTCCTGGTGCCGGACCTGCACCTGGAAGTGAGGCTGGGCCATCAGAGTCATCAGGAAAGGGACCGGATGGTGATGTGATTGATGCAGATTTCACTGACAGCAAGTGA 2124 0.4868 MASSTAQIHGLGTTGFASSSAKPKRTSSRTVFFGQRLSPSTASFGLPKTAFLKLKRNSRRDYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAASFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVSPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPTDEVERMVSEAERFAKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPAQVKEKVEAKLGELKDAISGGSTQVMKDAMAALNQEVMQLGQSLYNQPGAPGAGPAPGSEAGPSESSGKGPDGDVIDADFTDSK* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0304 707 FunFam Molecular chaperone DnaK 75 261 - -
Vvi17g0304 707 Gene3D - 250 431 - -
Vvi17g0304 707 Hamap Chaperone protein DnaK [dnaK]. 71 706 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi17g0304 707 ProSitePatterns Heat shock hsp70 proteins family signature 1. 77 84 IPR018181 -
Vvi17g0304 707 ProSitePatterns Heat shock hsp70 proteins family signature 3. 402 416 IPR018181 -
Vvi17g0304 707 SUPERFAMILY Actin-like ATPase domain 256 447 IPR043129 -
Vvi17g0304 707 NCBIfam molecular chaperone DnaK 73 668 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi17g0304 707 SUPERFAMILY Actin-like ATPase domain 73 253 IPR043129 -
Vvi17g0304 707 Gene3D - 75 444 - -
Vvi17g0304 707 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 573 670 IPR029048 -
Vvi17g0304 707 ProSitePatterns Heat shock hsp70 proteins family signature 2. 261 274 IPR018181 -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 208 228 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 399 415 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 453 472 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 101 113 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 267 277 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 430 450 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 124 132 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 534 550 - -
Vvi17g0304 707 PRINTS 70kDa heat shock protein signature 73 86 - -
Vvi17g0304 707 Coils Coil 317 344 - -
Vvi17g0304 707 MobiDBLite consensus disorder prediction 1 27 - -
Vvi17g0304 707 CDD HSPA9-Ssq1-like_NBD 72 447 - -
Vvi17g0304 707 FunFam Stromal 70 kDa heat shock-related protein 445 570 - -
Vvi17g0304 707 FunFam Molecular chaperone DnaK 572 672 - -
Vvi17g0304 707 Gene3D Actin; Chain A, domain 4 294 381 - -
Vvi17g0304 707 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 445 570 IPR029047 -
Vvi17g0304 707 MobiDBLite consensus disorder prediction 665 707 - -
Vvi17g0304 707 Gene3D - 572 671 IPR029048 -
Vvi17g0304 707 FunFam Molecular chaperone DnaK 294 381 - -
Vvi17g0304 707 PANTHER HEAT SHOCK PROTEIN 70KDA 74 632 IPR013126 GO:0005524|GO:0140662
Vvi17g0304 707 Pfam Hsp70 protein 74 668 IPR013126 GO:0005524|GO:0140662
Vvi17g0304 707 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 449 605 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0304 Vvi-Chr17 3189919 3194062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0304 74 632 Miscellaneous Gene Families AT5G28540 53.054 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0304 K03283 - vvi:100249184 1329.69