Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0302 ATGGGCATAAATGCAACTATATTTGCATATGGGCAAACCAGCAGTGGGAAGACTTACACAATGAGAGGAATAACAGAGAAAGCTGTTAATGATATCTATAAGCATATAATAAATAGTCCTGAGAGAGATTTTACAATAAAGATTTCTGGACTAGAAATTTATAACGAGAATGTCAAGGACCTATTGAATTCTGAATCAGGTCGCAACCTTAAGCTGTTAGATGATCCAGAGAAAGGAACTGTGGTTGAGAAGCTAGTGGAGGAGACTGCAAATAATGACCAGCATTTAAGACATTTGATTAGCATTTGTGAAGCTCAAAGGCAAGTGGGTGAAACTGCCCTCAATGACAACAGCTCTCGATCACACCAGATAATAAGGCTGACAATAGAAAGTACTCTCCGAGAAAATTCAGGTTGCGTCAAGTCTTTTGTTGCTAGCCTGAACTTTGTAGATCTAGCTGGAAGTGAAAGAGCCTCACAGACACATGCAGATGGTGCAAGGCTCAGGGAAGGCTGTCACATTAACCTTAGCTTGATGACTCTCACAACTGTAATCAGAAAACTCAGTGTCGGGAAAAGAAGCGGTCATATACCCTACCGAGACTCAAAACTCACTCGCATATTGCAGCACTCACTTGGTGGGAATGCTCGTACTGCAATCATCTGCACTTTGAGTCCAGCTTTGACACATGTTGAACAATCTCGGAATACACTCTTCTTTGCCACCCGAGCAAAGGAAGTGACAAATAATGCTCAAGTCAATATGGTTGTTTCAGACAAGCAGTTGGTGAAACATTTGCAGAAGGAAGTAGCCAGGCTGGAAGCAGAGCTGCGCACCCCAGATCCATCGAAGGAAAAAGATTTGAAAATCCAGAAGATGGAGATGGAAATTGAAGAGCTAAGGCGCCAAAGAGATCTTGCACAATCCCAGGTGGACGAATTAAGGAAAAAAATTCAGGACGACCCACAGCCTCAGAGTTCAAATCCATTTGACTCACCTCGTCCAGTGAAGAAGTGTCTCTCTTTCTCTGGTGCATTATCTCCAAAACTTGATGGCAAGGAACCAGGCCATGGTGACAGAATAAGGAATACAATGGGGAGGCAGACAATGAGGCAATCATCAACTGCTCCTTTCACATTAATGCATGAAATTCGCAAACTTGAACACCTTCAGGAGCAGCTTGGAGAAGAAGCTAATAGAGCTCTGGAAGTACTACAGAAGGAGGTGGCTTGTCATAGACTAGGTAACCAAGATGCAGCTGAGACTATTGCCAAGTTGCAAGCAGAAATAAGGGAAATGCAAGCTGTTCGATCAGTGCCAAAAGAAGTTGAAGTTGGCAGTGTTGTTGCTACTAACAAAAGTGTCAGTGCCAACCTCAAAGAAGAAATAACAAAACTTCATTCACAGGGCAGCACCATTGCAGATCTTGAGGAACAGCTTGAAAATGTTCAGAAGTCCATAGACAAATTGGTATTGTCTCTTCCAAGCAATAATCAACAGTCTAACAATGAATCAATTGTGAAGACCAAGAGTCAATCGAAAAAGAAAAAGTTGATTCCCCTAGCTTCGAGTAATGGTGCCAACAGGCAAAATTTCATAAGATCTCCCTGTTCACCTCTATCATCTAGGCAAACATTGGAGGCAGATGTTGAAAATAGAGCTCCAGAGAATGATGACATTGTGTACAGTGAGATAGTGCTGGAGTCTGAGAAGGAGACTCCTACAAAGAGTGAAGAAGGTGGAGATGTCTCATCAAAGGAGGGAACTCCTGGCTACCAACGTTCAAGTTCAGTAAACATGAGGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAGGAGAATGTGAGAAACATAAGAGCATATGTGACGGAATTGAAAGAACGTGTGGCCAAGCTACAATACCAAAAGCAGCTACTTGTTTGCCAGGTGCTTGAGATGGAAGCAAATGAAGCAGCCGGATATAATTTAGAGGAAGAGAACACAGCTGAGCCAGAGGAGCCCCCAGTTTCTTGGCATGTCACTTTTAGGGAGCAAAGACAGCAAATCATTGAGTTATGGGATTTGTGCTTTGTTTCCATTATTCACAGGACACAGTTCTATTTGTTATTTAAGGGGGACCCAGCTGATCAGATATACATGGAAGTGGAGCTTAGACGGCTGACCTGGTTGCAGCAGCACTTGGCAGAGCTCGGAAATGCAAGTCCAGCTCGAGTAGGAGATGAGCCCACAATTTCTCTATCATCAAGCATTAGAGCATTGAAGCGCGAGAAAGAGTTCCTGGCAAAGAGATTAACTACTCGTTTGACCCTTGAAGAGAGAGAGCTATTGTACCTAAAGTGGGATGTTCCGCTAGAAGGGAAGCAGAGGAAGATGCAGTTTGTGAACAAGCTTTGGACGGATCCCCATGATGCCAAGCATGTACAGGAGAGCGCTGAGGTTGTGGCAAAGCTGGTAGGGTTCTGCGAAAGCAGCAATATGTCAAAGGAGATGTTTGAGCTCAATTTTGTGCTTCCAGCAGATAAGAGGCCATGGGTTACGGGCTGGAACCAAATATCAAACCTTCTTCATCTGTGA 2574 0.4351 MGINATIFAYGQTSSGKTYTMRGITEKAVNDIYKHIINSPERDFTIKISGLEIYNENVKDLLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDNSSRSHQIIRLTIESTLRENSGCVKSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSKEKDLKIQKMEMEIEELRRQRDLAQSQVDELRKKIQDDPQPQSSNPFDSPRPVKKCLSFSGALSPKLDGKEPGHGDRIRNTMGRQTMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMQAVRSVPKEVEVGSVVATNKSVSANLKEEITKLHSQGSTIADLEEQLENVQKSIDKLVLSLPSNNQQSNNESIVKTKSQSKKKKLIPLASSNGANRQNFIRSPCSPLSSRQTLEADVENRAPENDDIVYSEIVLESEKETPTKSEEGGDVSSKEGTPGYQRSSSVNMRKMQKMFQNAAEENVRNIRAYVTELKERVAKLQYQKQLLVCQVLEMEANEAAGYNLEEENTAEPEEPPVSWHVTFREQRQQIIELWDLCFVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHLAELGNASPARVGDEPTISLSSSIRALKREKEFLAKRLTTRLTLEERELLYLKWDVPLEGKQRKMQFVNKLWTDPHDAKHVQESAEVVAKLVGFCESSNMSKEMFELNFVLPADKRPWVTGWNQISNLLHL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0302 857 PRINTS Kinesin heavy chain signature 146 164 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 PRINTS Kinesin heavy chain signature 2 23 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 PRINTS Kinesin heavy chain signature 112 129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 PRINTS Kinesin heavy chain signature 197 218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 Coils Coil 466 493 - -
Vvi17g0302 857 Coils Coil 387 407 - -
Vvi17g0302 857 MobiDBLite consensus disorder prediction 549 583 - -
Vvi17g0302 857 Pfam Kinesin motor domain 2 247 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 Coils Coil 608 628 - -
Vvi17g0302 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 280 IPR027417 -
Vvi17g0302 857 Gene3D Kinesin motor domain 1 278 IPR036961 -
Vvi17g0302 857 Pfam Domain of unknown function (DUF3490) 675 837 IPR021881 -
Vvi17g0302 857 Coils Coil 256 276 - -
Vvi17g0302 857 MobiDBLite consensus disorder prediction 301 320 - -
Vvi17g0302 857 MobiDBLite consensus disorder prediction 494 508 - -
Vvi17g0302 857 Coils Coil 283 317 - -
Vvi17g0302 857 MobiDBLite consensus disorder prediction 516 548 - -
Vvi17g0302 857 ProSiteProfiles Kinesin motor domain profile. 1 247 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 SMART kinesin_4 1 255 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi17g0302 857 ProSitePatterns Kinesin motor domain signature. 145 156 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi17g0302 857 PANTHER CENTROMERE PROTEIN E 2 838 IPR027640 GO:0003777|GO:0007018
Vvi17g0302 857 MobiDBLite consensus disorder prediction 494 597 - -
Vvi17g0302 857 Coils Coil 416 436 - -
Vvi17g0302 857 MobiDBLite consensus disorder prediction 301 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0302 Vvi-Chr17 3160676 3165198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0302 2 277 Miscellaneous Gene Families AT5G06670 45.936 3.98e-66 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0302 K11498 - vvi:100266348 1634.39