Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0301 ATGAAGGTATCATATATTGCAGTTTGTGCCGTACTGGTGCTACTCCTTGCTGAAGCACACATCACAGTGGCAGTAACATGCAGCCCCACGGAACTGAGCTCTTGCGTTGGTGCAATCACATCATCAACTCCACCGTCTAAACTATGCTGTAGCAAGATCAAGGAACAGAAGCCTTGCCTTTGCCAGTACCTCAAGAACCCCAACCTCAAGAAGTTTGTCAACTCCCCTAATGCCAGGAAGGTTGCTAGCACTTGTGGGACTCCCATCCCTAAGTGCTAG 279 0.491 MKVSYIAVCAVLVLLLAEAHITVAVTCSPTELSSCVGAITSSTPPSKLCCSKIKEQKPCLCQYLKNPNLKKFVNSPNARKVASTCGTPIPKC* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0301 92 CDD nsLTP2 27 92 IPR033872 GO:0006869
Vvi17g0301 92 SMART aai_6 27 92 IPR016140 -
Vvi17g0301 92 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 92 IPR036312 -
Vvi17g0301 92 Pfam Protease inhibitor/seed storage/LTP family 27 92 IPR016140 -
Vvi17g0301 92 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 5 92 IPR033872 GO:0006869
Vvi17g0301 92 Gene3D - 25 92 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0301 Vvi-Chr17 3158510 3158788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0301 3 92 Acyl Lipid Metabolism Gene Families AT3G18280 60.000 1.04e-34 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0301 - - vvi:109279843 182.185