Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0299 ATGCAAGATCCGACACCGCCGGTAAAGCTCTTTGGTCGTCAAAGGTCCATACATGAAGTTCTAGGAGGAGGAACAGTTGCAGATGTGCTGCTATGGAGGAACAAAATAGCATCGGCTGCACTTCTGATTGGGAGTGAAGTCATGTGGTTTCTTTTCGAGGTTGTTGAGTACAGTTTTGTGTCCCTTCTTTGTCACATTCTCATCACAGCAATGCTTGTGCTATTCATATGGAGCACTCTTTCTGAACATTTCAAATGGCCTCCTTTTGAGATCCCTGAAATCATTTTAGATGAGTACGCATTCAACTCAATTGCTTCAATCCTCCATGAAAGATTGAACCAGTTCTTGTCGATCATCGTCGACATCTCATGTGGAAAAGACCTACCACTCTTCTTTTTGACCCTTGTTTCTCTATGGATTCTGTCTGTGATGGGAAACTATTGCAGCTTCTGCAAACTTCTGTTCGTTGGCGTGCTCTTCTTGGAAACATTGCCATTTCTGTACGAGCGGTATGAGGAAGATGTTGATCACCATGCTATCATAATGCATCAACAGATAAAGAAAATGCTCAGCGAGGTCAATCTAAGTTTGCTCAACAAGGTTCCAAGAGGACCAGTGAAAGAGAAGAAGACCACATAA 639 0.4288 MQDPTPPVKLFGRQRSIHEVLGGGTVADVLLWRNKIASAALLIGSEVMWFLFEVVEYSFVSLLCHILITAMLVLFIWSTLSEHFKWPPFEIPEIILDEYAFNSIASILHERLNQFLSIIVDISCGKDLPLFFLTLVSLWILSVMGNYCSFCKLLFVGVLFLETLPFLYERYEEDVDHHAIIMHQQIKKMLSEVNLSLLNKVPRGPVKEKKTT* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0299 212 ProSiteProfiles Reticulon domain profile. 26 212 IPR003388 -
Vvi17g0299 212 Pfam Reticulon 26 179 IPR003388 -
Vvi17g0299 212 PANTHER RETICULON 9 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0299 Vvi-Chr17 3141621 3143565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0299 - - vvi:100245571 428.713