Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0296 ATGCCCAAAACCGAAAAAAAAAACAGTAAAAGACAAACCATTCATGGCGATCATATATACAAATACTTTGAGCTCCTAGTCTGCCATTCTCACCAGATGCCCATGGCTATGACCCCTTTCAGACTGTGTTCACTGGTTCTATTTTTATCTTGTGCTTTAGTTGCAGAATCAAAGTTCATGGTCTACAAAACTGGGCAGAGCGTTGTTCCCGGGAAGCTCAATGTTCATTTGGTTCCTCACACGCACAATGATGTGGGATGGAGGAAGACTGTTGATCAGTACTACGTGGGTTCAAACTATACTGCTGATGAAGGGTGTGTTGAGAATATACTGGATTCTTTGATTCCAGCACTTCTGGCTAATAAGAACCGGAGATTCATCTATGTTGAACAGGCATTTTTCCAGCGTTGGTGGAGAGACCAGAGCAAGATAGTCCAGAATATAGTCAAGCAGCTTGTCAGCTCGGGTCAACTAGAGTTCATAAATGGGGGTATGTGCATGCATGATGAGGCTGCCACAAATTACATTGACATGATTGATCAGACAACCCTTGGGCATCGGTTTATCAAAGATGAGTTCGGTGTGACTCCCAGAATTGGTTGGCAAATTGATCCCTTTGGCCATTCTGCAGTGCAGGCTTATCTGTTGGGAGCAGAGGTTGGATTCGATTCTCTTTTCTTTTGGCGAATCGACTACCAAGACGTAGCTAAACGGAAAAAAGAGAAGAGTCTTGAGGTTGTCTGGCAGGGCTCTAAGAGTTTTGGTTCATCAGCACAGATCTTTGCTAGTGTGTTCCCAGAGAGCTATGCACCTCCAACTGGTTTCAACTTTGAAATTAACTACGGCTCCCCTATTGTCCAGGATGACATCAACTTATTTGACTACAATGTCCAAGAGCGTGTTAACGACTTTGTATCTGCTGCAATCTCACAAGCTAACATAACTCGCACAAATCATATAATGTGGACCATGGGGATGGATTTCATGTATCAATATGCAACCACATGGTTCCGGCAAATGGACAAGCTTATCCATTATGTTAATCAAGATGGAAGAGTCAATGCCTTGTACTCAACCCCATCAATTTACACTGATGCAAAATATGCAGCAAATGAGTCCTGGCCACTCAAAACTGATGATTTCTTTCCATATGCAAATACTCTCAACACTTACTGGACAGGATATTTCACGAGTCGACCAGCCCTCAAAGGCTATATAAGAATGTTAAGTGGATACTATTTGGCAGCAAGGCAATTGGAATTTTTCAAGGGGAGGAGTAAAACAGGTCCAAAGACTGACACTCTAGCTGATGCTTTGGCGATTGCTCAGCATCATGATGCGGTTACTGGCACAGAGCAGCAGCATGTGGCTGATGATTACGCAAAACGACTGTCAATAGGCTACAAGGAGGCTGAAGAGTTAGTTGCAACTTCACTTGCTTGCATGGTAGAGTCAGCATCAAAAACTGGATGCAGGAACCCCGCGACTAAGTTTCAACAGTGTCCACTCATGAATATAAGTTACTGTCCCCCATCAGAAATAGATCTGTCTCGAGGGAAAAACCTGGTTGTTGTTGTGTACAATTCTCTGGGATGGAAAAGAGATGATGTAATTAGAATTCCTGTGATCAATGGGAATGTCACTGTTAAGGACCCTAGTGGAAAAGAAATAGAGTCACAGCTTCTACCTATAGCCAATGCTTCTCTTGGCATAAGAAGCTTTTCTACTATGGCTTATCTGGGCAAATCCCCAAGTGTGGCCCCCAAGTATTGGCTTGCATTTTCAGCATCTGTACCACCTCTTGGCTTCAGCACTTACATTGTCTCAGGCGCAAAATCATCAGCTTCTGCTTCAGTCAGGCAAACATTTTACAGGTCAGAGAGGAGCCAAAATAAGACAATTGAAGTAGGACCGGGAAATTTGAAACTTAATTATTCTGGAAATGAAGGAAAACTTACTAATTATGCTAATGTTAGAAACTCGATTAAAGCATTCTTGGAGCAATCATACAGTTTTTACTCTGCAAATGATGGAACCGAGCCTTTCATTTCTCCCACTGATGGAACTGAGGTTTTTCAGCCCTCTGGAGCATACATCTTCCGTCCTAATGGTACACATCCCATAAAATCTGAAGGGCAGGTTTCTTTTACTGTTCTTCGAGGATCATTATTGGATGAAGTACATCACAGAATCAATTCATGGATATATCAGATCACCAGACTGTACAGGGATAAAGAGCATGCTGAAGTTGAGTTTACTGTTGGATCTATTCCTATTGATGATATGATAGGCAAAGAGGTTGTAACTAGGATTACAACAACCATGAAGAGCAACAAAACATTTTATACAGATTCTAATGGACGTGATTTCATTAAAAGGATTCGAGATTATAGAAGTGACTGGGACCTTGAAGTGAATCAACCTATTGCAGGAAATTATTACCCGATTAATCTGGGAATTTACACAAAAGACAACAGGACAGAGCTGTCAGTCTTGGTTGATCGACCTGTGGGAGGATCCAGCATTGCAGATGGGCAGTTGGAGCTAATGCTCCATAGGAGGCTGGTTACGGAGGATGACAAAGGAGTTAGAGAGGGACTAGATGAGACAGTGTGTGTTGTTGATAAATGTGAAGGACTAACCATTCAGGGAAAGTATTATCTCAGAATTGATCCTTTAGGAGAGGGTGCTAAATGGCGTCGATCATATGGCCAAGAGATATATTCTCCTCTCCTATTAGCCTTCTCTGAGCAGGATGGAGATAATTGGGCAAACTCTCATTTACCCTCCTTTTTGGGGATGGATCCCTCCTATATGTTACCAGATAATATAGCAATGATAACCCTTCAGGAACTGGATGAAGGAAAAGTTCTCCTCAGGTTGGCACACTTATACGAGATTGGGGAGGACAAGGATCTCTCAGTCATGGCAAGTGTAGAACTGAAAAAAGTTTTCCCAGAAAAGAAGATAATCAAAATAACAGAGATGTCCTTATCTGCTAACCAAGAAAAGGCAGAAATGGAGAAGAAGAGACTGGTTTGGAAAGTAGAAGGCTCTGCTGAAAAAAAATCCACAGTGTTGAGGGGAGAACCTGTCCACCCAGAAAAGCTAGTGGTGGAACTTGCTCCAATGGAAATTCGCACCTTCATTATCAACTTCAGTTACAAACAGGTCCATCACTGA 3183 0.4229 MPKTEKKNSKRQTIHGDHIYKYFELLVCHSHQMPMAMTPFRLCSLVLFLSCALVAESKFMVYKTGQSVVPGKLNVHLVPHTHNDVGWRKTVDQYYVGSNYTADEGCVENILDSLIPALLANKNRRFIYVEQAFFQRWWRDQSKIVQNIVKQLVSSGQLEFINGGMCMHDEAATNYIDMIDQTTLGHRFIKDEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFWRIDYQDVAKRKKEKSLEVVWQGSKSFGSSAQIFASVFPESYAPPTGFNFEINYGSPIVQDDINLFDYNVQERVNDFVSAAISQANITRTNHIMWTMGMDFMYQYATTWFRQMDKLIHYVNQDGRVNALYSTPSIYTDAKYAANESWPLKTDDFFPYANTLNTYWTGYFTSRPALKGYIRMLSGYYLAARQLEFFKGRSKTGPKTDTLADALAIAQHHDAVTGTEQQHVADDYAKRLSIGYKEAEELVATSLACMVESASKTGCRNPATKFQQCPLMNISYCPPSEIDLSRGKNLVVVVYNSLGWKRDDVIRIPVINGNVTVKDPSGKEIESQLLPIANASLGIRSFSTMAYLGKSPSVAPKYWLAFSASVPPLGFSTYIVSGAKSSASASVRQTFYRSERSQNKTIEVGPGNLKLNYSGNEGKLTNYANVRNSIKAFLEQSYSFYSANDGTEPFISPTDGTEVFQPSGAYIFRPNGTHPIKSEGQVSFTVLRGSLLDEVHHRINSWIYQITRLYRDKEHAEVEFTVGSIPIDDMIGKEVVTRITTTMKSNKTFYTDSNGRDFIKRIRDYRSDWDLEVNQPIAGNYYPINLGIYTKDNRTELSVLVDRPVGGSSIADGQLELMLHRRLVTEDDKGVREGLDETVCVVDKCEGLTIQGKYYLRIDPLGEGAKWRRSYGQEIYSPLLLAFSEQDGDNWANSHLPSFLGMDPSYMLPDNIAMITLQELDEGKVLLRLAHLYEIGEDKDLSVMASVELKKVFPEKKIIKITEMSLSANQEKAEMEKKRLVWKVEGSAEKKSTVLRGEPVHPEKLVVELAPMEIRTFIINFSYKQVHH* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0296 1060 FunFam Alpha-mannosidase 352 432 - -
Vvi17g0296 1060 SUPERFAMILY Galactose mutarotase-like 495 1053 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vvi17g0296 1060 SMART Alpha_mann_mid_2 390 464 IPR015341 GO:0004559|GO:0006013
Vvi17g0296 1060 SUPERFAMILY Glycoside hydrolase/deacetylase 62 386 IPR011330 GO:0005975
Vvi17g0296 1060 FunFam Alpha-mannosidase 635 909 - -
Vvi17g0296 1060 FunFam Alpha-mannosidase 510 635 - -
Vvi17g0296 1060 Pfam Glycosyl hydrolases family 38 N-terminal domain 74 385 IPR000602 GO:0004559|GO:0006013
Vvi17g0296 1060 FunFam Alpha-mannosidase 929 1055 - -
Vvi17g0296 1060 SUPERFAMILY Families 57/38 glycoside transferase middle domain 389 482 IPR028995 -
Vvi17g0296 1060 Pfam Glycosyl hydrolases family 38 C-terminal domain 638 859 IPR011682 GO:0004559|GO:0006013
Vvi17g0296 1060 Pfam Alpha mannosidase middle domain 391 481 IPR015341 GO:0004559|GO:0006013
Vvi17g0296 1060 Gene3D - 931 1059 - -
Vvi17g0296 1060 FunFam Alpha-mannosidase 73 353 - -
Vvi17g0296 1060 CDD GH38N_AMII_LAM_like 73 349 - -
Vvi17g0296 1060 Gene3D - 510 635 IPR013780 -
Vvi17g0296 1060 Gene3D Glycoside hydrolase family 38, central domain 354 432 IPR037094 GO:0004559|GO:0006013
Vvi17g0296 1060 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 943 1050 IPR041147 -
Vvi17g0296 1060 Gene3D Glycoside hydrolase 38, N terminal domain 73 353 IPR027291 -
Vvi17g0296 1060 Gene3D - 636 909 - -
Vvi17g0296 1060 FunFam Alpha-mannosidase 433 488 - -
Vvi17g0296 1060 Gene3D Glycoside hydrolase family 38, central domain 433 489 IPR037094 GO:0004559|GO:0006013
Vvi17g0296 1060 PANTHER ALPHA-MANNOSIDASE 45 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0296 Vvi-Chr17 3111086 3118604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0296 42 966 Glycoside Hydrolase AT5G13980 66.738 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0296 K01191 - vvi:100252482 2144.39