Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0285 ATGTCGAACCTTGGGTTGAACAATCGGAATAATAGCGGCCAGAGATTAGGCATCACAGAACCTATTTCACTGGGTGGACCAAATGAGTTGGATGTGACCAAGACTCAAGAGCTCGAAAAGTTTTTGGCAGCTGCTGGGTTGTATGAAAGTCAAGAAGAAGCTGTGAGCAGGGAGGAAGTGCTTGGGAGATTAGACCAGATCGTCAAGATTTGGGTGAAAGCCATTAGTCGCGCCAAGGGATTGAATGAACAACTGGTGCAAGAAGCAAATGCTAAGATTTTCACCTTTGGGTCTTATCGGCTGGGGGTGCATGGCCCTGGTGCGGATATAGATACGCTTTGTGTTGGACCTAGACATGCAACCCGAGAAGAAGATTTTTTTGGTGAGCTGCATAAAATGCTCTCAGAGATGCCTGAAGTAACGGAGTTGCACCCTGTGCCTGATGCACATGTTCCAGTGATGAGATTCAAGTTCAGTGGTGTTTCTATCGACCTTCTTTACGCAAAACTATCACTTTGGGTCATTCCTGAAGACTTGGATGTTTCACAAGACTCCATATTGCAGAATGCTGATGAGCAAACAGTTCGTAGTCTCAATGGTTGTAGAGTTACTGACCAAATCCTGCGTTTGGTACCAAATATTCAGAATTTTCGAACAACATTGAGATTCATGAGATTTTGGGCAAAGCGGCGTGGTGTTTATTCAAATGTTGCAGGGTTTCTTGGCGGTATAAACTGGGCATTGCTTGTTGCTCGCATATGCCAGCTATATCCCAATGCATTGCCCAGTATGCTAGTCTCTCGGTTCTTCAGGGTCTATACTCAATGGCGTTGGCCAAATCCTGTCATGCTGTGTGCTATTGAAGAAGGAACACTTGGACTTCAAGTTTGGGATCCTAGAAAATATCCAAAGGACAGGTTCCATTTGATGCCTATAATTACCCCAGCTTATCCCTGCATGAATTCTAGTTACAATGTGTCATCAAGTACTTTGCGGATTATGTCAGAAGAATTTAAGAGGGGAAATGAAATTTCTGAGGTTATGGAGGCAAACAAGGCTGATTGGGCTACCCTTTGTGAGCCTTATCCTTTCTTTGAAGCTTACAAGAATTATCTACAGATAGAAATTGCCGCAGAAAATGCAGATGACTTAAGGAAATGGAAAGGCTGGGTTGAGTCTCGCCTCCGTCAGCTAACTCTGAAGATTGAGAGGCACACTTATAACATGCTTCAATGCCATCCACACCCGGGTGATTTCTCAGACAAATCTAGACCTTTTCATTGTTGTTATTTCATGGGCCTGCAAAGAAAGCAGGGAGTTCCCGCAAGCGAAGGGGAGCAATTTGACATAAGGTTGACTGTTGATGAATTTAAGCATTCTGTTGGCATGTACACATTGTGGAAACCTGGAATGGAGATTCATGTAATCCATGTAAGACGCAGGAACATACCCAATTTTGTGTTTCCTGGTGGGGTTCGACCTTCTCGCCCTACTAAAGTAGCCAGTGAGAGGAGGCGGGTTTTAGAACCTAATGTCTCTACCCAAGCAGTTCTAGAGGGAGCAGAAGATAGCAAGAAAAGAAAGCGAGAGGATGAAAATGTAGAGACTAACTCAAGAAATGCCAAATGTTTGGTTGCTGCAGCTTCCTCCAGTCATGAAGTTCTTTCGAGTAACCCTCTTGTCAGTACTGTCAATGCCTGTTCAATAAAAGTTGACAGTATGGATATAAATATGTTGGGAAAGACAAGGAAAGAAAAAGTTGAAAATAATATAGAGCATGGCTTGAAGAATTTGAATAATTCAGTTGAGGTTCCTCCTCAGAATGGTGAAGTTGATGGATCTGTGAGATGCTCTCACCCTATTAAAACTTTATCTTCTTCCGGGGGTTCACCAAGCTCTACAGAAGCAGAGAAAATTGCGATTGAGAAGATCATGTCTGGTCCATATGTTTCTCATCAAGCTTTCCCAGGGGAACTTGATGAGCTTGAAGATGATGTTGAATATAAAAATCAAGTCAAAGATTTCACAGGGAGCACAAAAGGCAGCTCTGCAGAATCTTCAAAAGCAAATGTAGCAGAGGAGCCTCTAACAACTACCAGTGGAACTGTTCCTTGCACCATTTTAAGCCCAAATGGGGGCTTGGAGGAGCTTGAGCCTGCTGAACTCATGCCACCATTGTCATACGGGAACCGGCCCTCATCGACAGAGCAGAAGAAGCCAATTATAAGGTTGAGCTTCACTTCCCTAGCTAAAGCTACAGGCAAAAGCACCTGA 2274 0.4371 MSNLGLNNRNNSGQRLGITEPISLGGPNELDVTKTQELEKFLAAAGLYESQEEAVSREEVLGRLDQIVKIWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELHKMLSEMPEVTELHPVPDAHVPVMRFKFSGVSIDLLYAKLSLWVIPEDLDVSQDSILQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRFMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPSMLVSRFFRVYTQWRWPNPVMLCAIEEGTLGLQVWDPRKYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMSEEFKRGNEISEVMEANKADWATLCEPYPFFEAYKNYLQIEIAAENADDLRKWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSRPFHCCYFMGLQRKQGVPASEGEQFDIRLTVDEFKHSVGMYTLWKPGMEIHVIHVRRRNIPNFVFPGGVRPSRPTKVASERRRVLEPNVSTQAVLEGAEDSKKRKREDENVETNSRNAKCLVAAASSSHEVLSSNPLVSTVNACSIKVDSMDINMLGKTRKEKVENNIEHGLKNLNNSVEVPPQNGEVDGSVRCSHPIKTLSSSGGSPSSTEAEKIAIEKIMSGPYVSHQAFPGELDELEDDVEYKNQVKDFTGSTKGSSAESSKANVAEEPLTTTSGTVPCTILSPNGGLEELEPAELMPPLSYGNRPSSTEQKKPIIRLSFTSLAKATGKST* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0285 757 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Vvi17g0285 757 PANTHER POLY A POLYMERASE 9 541 - -
Vvi17g0285 757 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0285 757 MobiDBLite consensus disorder prediction 516 538 - -
Vvi17g0285 757 MobiDBLite consensus disorder prediction 520 537 - -
Vvi17g0285 757 FunFam Putative poly(A) polymerase gamma 179 359 - -
Vvi17g0285 757 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Vvi17g0285 757 CDD NT_PAP_TUTase 57 211 - -
Vvi17g0285 757 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Vvi17g0285 757 Pfam Poly(A) polymerase predicted RNA binding domain 422 495 IPR007010 GO:0003723|GO:0043631
Vvi17g0285 757 Gene3D - 17 358 - -
Vvi17g0285 757 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Vvi17g0285 757 MobiDBLite consensus disorder prediction 675 701 - -
Vvi17g0285 757 Pfam Nucleotidyltransferase domain 82 166 IPR002934 GO:0016779
Vvi17g0285 757 Pfam Poly(A) polymerase central domain 17 360 IPR007012 GO:0043631|GO:1990817
Vvi17g0285 757 MobiDBLite consensus disorder prediction 1 18 - -
Vvi17g0285 757 FunFam Nuclear poly(A) polymerase 4 363 478 - -
Vvi17g0285 757 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vvi17g0285 757 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Vvi17g0285 757 FunFam Poly(A) polymerase alpha, putative 49 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0285 Vvi-Chr17 3008089 3020034 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0285 K14376 - vvi:100268087 1508.43