Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0282 ATGGTTGAATCATTTGCCTTTGCCATAGCTGACAGAGTTTTGGGGAAGTTGGGCTCTGCCCTCATCCAAGAAGTTGGCCTTGCCTGGGGTGTTAAAACCGAGCTGGAAGAGCTCAACGATACTTTATCCACCATCCGAGCGGTGCTCTTAGATGCTGAGGAGAAGCAAGCCACCAGCCATCAGCTGAGAGATTGGCTGGGAAAGCTCAAAGTTGGCTTTTATGATGCTGAAGATATTGTCGATGAATTTGAATATGAGGCCTTACGCCAGAAAGTGGTGGCTAGTGGGAGTTTTAAAACCAAGCAAGAGGGAGATGACCCACTCCTTTGTCCGAGCTTCCGATGTGATGAAAGTTACAGTGACTCCTCCATGGAGCAGTTGCAGAGTCATCTTAGAAATGCATTAGATGGTGAAAAATTCTTGCTGGTTTTGGATGATGTGTGGAATACGGATCGTGAGAAGTGGCTTAAGCTGAAAGACTTGCTCGTGGACGGTGCCAGTGGAAGCAAAATTCTTGTAACTACACGCAAGAAGTCAACTGCTTCAATCATGGGCACTTTTCCCATGCAAGAAATAAAGGGTCTTTCTCATGACGATTGTTTATCTTTATTTGTGAAATGCGCATTTAGGGACGGAGAAGATAAACAATATCCAACCCTTTTAAAAATTGGGGACCAAATTGTTGAGAAATGTGCAGGGGTTCCTCTGGCTGTGAGAAGTTTAGGGAGTTTGCTACTGAGCTATTATGATTTGCCTTATCACTTGAAACAATGCTTTGCTCTTTGTTCCCTATTTCCCAAAGATTATGAATTTAGTAATGTTGTTTTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAGCTGATACTAGGAGTACTATATACATTCAAAATGCACGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAATACTAAATTTTCATAGTAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGAGTGGCCCAAAGAAGAGTGTAAAGCTTTAAAATTCTTGGAGAAAAGCGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGATATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAAATCTATTGGTAGTATGAAGCATCTAAGATTTTTGGACTTAAGTGGAAATAAGAGAATCAAAAAACTCCCTAATTCCATTTGTAACTTGAATTCTCTTCAACGATTAGAGATTTTTGGTTTCTTTGTCACATGGTATAAAACTCTTGACTGCATTAGAGCCAACTTCTAA 1401 0.4011 MVESFAFAIADRVLGKLGSALIQEVGLAWGVKTELEELNDTLSTIRAVLLDAEEKQATSHQLRDWLGKLKVGFYDAEDIVDEFEYEALRQKVVASGSFKTKQEGDDPLLCPSFRCDESYSDSSMEQLQSHLRNALDGEKFLLVLDDVWNTDREKWLKLKDLLVDGASGSKILVTTRKKSTASIMGTFPMQEIKGLSHDDCLSLFVKCAFRDGEDKQYPTLLKIGDQIVEKCAGVPLAVRSLGSLLLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQLILGVLYTFKMHDLVHDLAMFFAQPECLILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKSESFVKACILRFKCIRILDLQDSNFEALPKSIGSMKHLRFLDLSGNKRIKKLPNSICNLNSLQRLEIFGFFVTWYKTLDCIRANF* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0282 466 Gene3D - 194 255 IPR042197 -
Vvi17g0282 466 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Vvi17g0282 466 Pfam Leucine rich repeat 397 449 IPR001611 GO:0005515
Vvi17g0282 466 SUPERFAMILY L domain-like 327 451 - -
Vvi17g0282 466 Pfam Rx N-terminal domain 12 98 IPR041118 -
Vvi17g0282 466 CDD RX-CC_like 6 91 IPR038005 -
Vvi17g0282 466 Gene3D - 256 337 IPR036388 -
Vvi17g0282 466 PRINTS Disease resistance protein signature 231 245 - -
Vvi17g0282 466 PRINTS Disease resistance protein signature 414 430 - -
Vvi17g0282 466 PRINTS Disease resistance protein signature 134 148 - -
Vvi17g0282 466 Gene3D - 11 103 - -
Vvi17g0282 466 Coils Coil 35 55 - -
Vvi17g0282 466 Pfam NB-ARC domain 120 247 IPR002182 GO:0043531
Vvi17g0282 466 FunFam Probable disease resistance protein At1g63360 248 338 - -
Vvi17g0282 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 262 IPR027417 -
Vvi17g0282 466 Gene3D Ribonuclease Inhibitor 363 460 IPR032675 -
Vvi17g0282 466 PANTHER DISEASE RESISTANCE PROTEIN RP 95 447 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0282 Vvi-Chr17 2907541 2909885 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0282 - - vvi:100242377 509.22