Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0280 ATGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAGGCAATCCAGTGATACAGAGAATGAGAAGCAAGCAACCAATCGTCAGATTAGCGATTGGCTTGGAAAGCTCAAACTCGTCCTTTATGATGCAGAGGATGTGCTCGATGAATTTGACTATGAAGCTTTGCGGCAGCAGGTGGTGGCCAGCGGATCAAGCATTACGTCAAAGGTACGCAGTTTCATTTCAAGTTCAAAATCGCTTGCGTTCCGTCTTAAGATGGGCCATAGAGTGAAGAGTATAAGAGAGAGATTAGACAAAATTGCAGCTGATAAGTCTAAATTTAATCTCACCGAGGGAATTGCAAACACCCGCGTAGTACAGAGGGAGAGGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAGGCAATCCAAACTAAGAGGCCTTTCCCTTGAGGATTGTTTGTCTTTATTTGTGAAATGTGCATTTAAGGACGGAGAAGATGAACAACATCCAAACCTTTTAAAAATTGGGGAACAGATTATTGAGAAATGTGCAGGGGTTCCTCTTGCTGTGAGAAGTTTAGGGAGTTTACTGCATTTGAAAAGGGATGAACGGGATTGGGTATCCATTAAAGAGAGCGAAATTTGGAAATTAGAACAAGATGAAAATAGGATTATGGCTGCATTAAAGCTGAGCTATTATGATTTGCCTCATCACTTCAGACAATGTTTTGCCCTTTGTTCGATATTTCCCAAAGATTTTGAATTTGATAATCGTCTTCTGATCTCAATTTGGATGGCGCAAGGCCTCATTCAATCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAACTATATTAATGAACTATTGTCGAGATCTTTGTTTCAAGATGTTAAGCAAAACGTACCAGGAGTAATATATGCCTTTAAAATGCATGATCTTGTACATGATCTTGCGATATTTTTTGCACAACCTGAGTATGTAACACTAAATTTTCACAGTAAAGACATTTCTAAAAGGGTTCAACATGTTGCATTTTCTGACAATGATTGGCCAAAAGAAGAGTTTGAAGCTTTAAGATTCTTGGAGAAGCTAAACAATGTCCGTACCATTGATTTTCAAATGGACAATGTTGCTCCTAGAAGCAACTCATTTGTTATGGCATGTGTCTTGAGATTCAAATGTATGCGGGTATTGGATTTAACTGAATCCAGCTTTGAAGTGTTGCCTGATTCAATTGATAGTCTGAAGCATCTAAGATTCTTGAACCTATCTAAGAATGAGAGAATCAAGAAACTCCCTAATTCCATTTGCAAGTTGTACCATTTGCAAACTTTGATGCTAGGTGAATGTTCAGAACTTGAAGAATTCCCAAGAGGCATAGGGAGTATGATTACCTTATTGCACTTCGAATATTAA 1503 0.3979 MQRETHSFVRASDVIGRDDDKENIVGLLRQSSDTENEKQATNRQISDWLGKLKLVLYDAEDVLDEFDYEALRQQVVASGSSITSKVRSFISSSKSLAFRLKMGHRVKSIRERLDKIAADKSKFNLTEGIANTRVVQRERQRETHSFVRASDVIGRDDDKENIVGLLRQSKLRGLSLEDCLSLFVKCAFKDGEDEQHPNLLKIGEQIIEKCAGVPLAVRSLGSLLHLKRDERDWVSIKESEIWKLEQDENRIMAALKLSYYDLPHHFRQCFALCSIFPKDFEFDNRLLISIWMAQGLIQSSGQNAKMEDIGENYINELLSRSLFQDVKQNVPGVIYAFKMHDLVHDLAIFFAQPEYVTLNFHSKDISKRVQHVAFSDNDWPKEEFEALRFLEKLNNVRTIDFQMDNVAPRSNSFVMACVLRFKCMRVLDLTESSFEVLPDSIDSLKHLRFLNLSKNERIKKLPNSICKLYHLQTLMLGECSELEEFPRGIGSMITLLHFEY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0280 500 Gene3D - 173 257 IPR042197 -
Vvi17g0280 500 PANTHER DISEASE RESISTANCE PROTEIN RP 131 498 IPR044974 GO:0006952
Vvi17g0280 500 Pfam NB-ARC domain 169 259 IPR002182 GO:0043531
Vvi17g0280 500 Gene3D Ribonuclease Inhibitor 355 499 IPR032675 -
Vvi17g0280 500 FunFam Probable disease resistance protein At1g63360 259 349 - -
Vvi17g0280 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 273 IPR027417 -
Vvi17g0280 500 Gene3D - 258 348 IPR036388 -
Vvi17g0280 500 SUPERFAMILY L domain-like 338 498 - -
Vvi17g0280 500 Gene3D - 19 107 - -
Vvi17g0280 500 Pfam Rx N-terminal domain 36 84 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0280 Vvi-Chr17 2893561 2898013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0280 390 495 Receptor kinase-like Gene Family AT2G15080 29.907 2.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0280 - - vvi:100242377 712.22