Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0279 ATGTTTAGGGTTAGTGTGGGGGGCATTCTGAACGATTTGTTTGACCGTTATTTCATACAAAGTCGGTTCCAAACCCCTGAACTGCGGATTCCAAAGCTTTGTCCCCCGTATCTGGAGCCTAGGTACGCTAGTTCTATTATGAATCCTACTTCAATCCATGCTATTAAGCTTAATCTCTACAAATGCCCACTCTCATTAACAGTTTTGCGCTTCATCCTTATACCAAAATTTCCCTATTCTTCTTCTTCTTCTTCATCTCTGCAAACCCTTAACCAATCTCAAACCAATTCAATCTCAAACTCACTCTATCACCTTCTCCCCCAAACCCAAAACCCCAACAACATTGTCAATCTCATCTGCTCTAATCTCAAGCAACACAATTCCAATCTTGCCCTTCTTCACACAGAAGTGAACGCGCTTCTCCCTCATCTGGGCGCCCAGGAAATTTCTAGGGTTCTGTTGAGATGCCAATCTGATTCCTTCACGGCTCTCTCTTTCTTCAATTGGGTAAAAAATGATCTGGGTCTGAGACCCAGTACCCAGAACTATTGTATTGTCGTTCATACGTTGGCATGGTCTAGGAATTTTTCCCAAGCAATGAAATTTTTATGTGAATTGGTGGAGTTGGTTAAGGATGATTTGCCCAGTGAAGATGTTTTCAAAAATTTGATTTTGTGTACTGAAGATTGTAATTGGGACCCTGTTGTCTTCGATATGCTTGTTAAGGCCTATCTGAGAATGGGGCGGGTTCGAGAGGGTTTAAGAAGTTTTAGGAGGATGTTAAGGGTTGGTTTTGTCCCCACTGTGATTACCTCAAATTATCTTTTGAATGGATTGTTGAAGCTGAATTATACTGATCGGTGTTGGGAAGTTTATGAAGAAATGGAAAGATTTGGGATAGCTCCAAATTTGTATACATTTAATATTTTGACTCACGTTCTATGCAAGGATGGGGATACAGGTAAGGTGAACAAGTTCTTAGAGAAGATGGAAGAAGAAGGGTTCGACCCTGATATTGTGACTTATAATACACTGATAAATAGCTATTGTAGGAAAGGAAGGCTGGATGATGCATTTTATCTGTATAAGATCATGTATAGGAGGGGTGTGGTGCCAGATTTGGTATCATATACTGCCTTGATGAATGGTCTTTGTAAAGAAGGGAGGGTGAGAGAAGCTCATCAGCTCTTCCATAGGATGGTTCATAGAGGGCTGAGTCCAGATATTGTAACATACAACACTCTTATTCATGGTTATTGCAAGGAGGGAAAGATGCAAGAATCAAGGTCATTGTTGCATGACATGATATGGAATGGGATCTCTCCAGACAGTTTCACTTGTTGGGTACTTGTGGAAGGATATGGGAAAGAGGGTAAATTTCTTTCAGCTTTGAATTTGGTTGTGGAGCTTCAGAGATTTGGAGTTTCAATATCACAGGATATTTATTCTTACCTAATAGTGGCTTTGTGTCGGGAGAATCGGCCTTTTGCAGCCAAGAACCTTTTGGAGAGAATGTCTAAAGATGGCCACAAGCCTGAGTTGGAGATTTATAATGAGTTAATCAAATCATTCTGCCAATGTGATTGTATAGCAGAGGCTTTACTACTGAAAATGGAGATGGTAGATAAGGAAATAAAGCCCAATTTAGCTACTTATAGAGCTGTTATAGGCTGCTTGAGTAGATTAAGTAGAAGTATGGAGGGTGAATCATTAGTGGGTGAAATGGTTGCATCTGGCATGCTACCTGATTTGGAAATTTGCAGGGCTTTATTTTATGGGTACTGCAGGGAAAATGATATTGATAAAGCAGAATCACTATTGAGCTTCTTTGCCAAGGAATTCCAAATTCATGACACAGAAAGTTTTAATGCACTTATCAGAATTACCAGTGCAAAGGGTGACATTGCTAGGTCATTGGAGATCCAGGATATGATGCTGAAAATGGGGCTTTTGCCAAATCCACTGACATGCAAGTATGTGATTGATGGCTTATGGAAAGCCAGGAGGGTGGACTCTGCAAGCTTGATGAAATGA 2034 0.4046 MFRVSVGGILNDLFDRYFIQSRFQTPELRIPKLCPPYLEPRYASSIMNPTSIHAIKLNLYKCPLSLTVLRFILIPKFPYSSSSSSSLQTLNQSQTNSISNSLYHLLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGAQEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSASLMK* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vvi17g0279 677 Gene3D Tetratricopeptide repeat domain 115 295 IPR011990 GO:0005515
Vvi17g0279 677 Gene3D Tetratricopeptide repeat domain 296 367 IPR011990 GO:0005515
Vvi17g0279 677 Gene3D Tetratricopeptide repeat domain 615 677 IPR011990 GO:0005515
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat 589 607 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat 235 265 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat 481 509 IPR002885 -
Vvi17g0279 677 Gene3D Tetratricopeptide repeat domain 368 462 IPR011990 GO:0005515
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi17g0279 677 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 302 608 - -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 340 373 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 551 583 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 375 409 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 273 303 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 305 339 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 235 269 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 516 548 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 481 512 IPR002885 -
Vvi17g0279 677 NCBIfam pentatricopeptide repeat 410 444 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat family 516 559 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat family 337 386 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat family 407 455 IPR002885 -
Vvi17g0279 677 Pfam PPR repeat family 267 316 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vvi17g0279 677 Gene3D Tetratricopeptide repeat domain 463 614 IPR011990 GO:0005515
Vvi17g0279 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0279 Vvi-Chr17 2886956 2888989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0279 334 674 Glycosyltransferase AT1G05670 25.439 2.31e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0279 - - vvi:100852903 1348.95