Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0277 ATGGCGGCTCCCGTGGCTCCTCTGGTGCGCTCCTCCAAGACCGAGAGCTACGTTGACAACAAGCGCAAAGATGACATCCGCCAAGCCAACATCGTCGCGGCACGAGCTGTGGCTGATGCCGTCCGCACCAGCTTGGGCCCCAAGGGCATGGACAAGATGATTTCCACCGCCAGCGGCGAGGTTATCATTACCAACGACGGCGCCACCATTCTCAACAAGATGGAGGTGCTCCAGCCGGCGGCAAAGATGCTTGTGGAGCTCTCTAAGTCTCAGGATATTGTTGCTGGCGATGGCACTACCACCGTGGTTGTTATCGCCGGCGCTCTACTGAAGCAGTGCCTCTCGCTTCTTTCGCACGGCATTCACCCAACAATCATCTCAGATTCGCTCCACAAGGCGTCGATCAAGGCCGTGGATGTCCTCACTGCCATGGCCGTTCCGGTGGAACTCTCCGACCGCGAATCATTGATTAAATCCGCCAGCACTTCGCTTAACAGCAAGGTTGTGAGCCAGTACTCGACGCTGCTCGCTCCGCTTGCCGTTGATGCAGTGCTCTCCGTCGTCGACCCGGCGAAGCCCGACCTCGTGGATCTCCGCGACGTCAAGATCGTGAAAAAGCTGGGAGGTACTGTGGACGACACCGAGTTGGTCAAGGGCTTGGTTTTCGACAAGAAGGTGAGTCACACAGCTGGCGGGCCGACCCGGGTGGAGAACGCTAAGATTGCAGTGATTCAGTTCCAGATTTCGCCTCCAAAGACTGATATTGAGCAGAGTATTGTAGTTTCCGATTATACCCAAATGGACCGGATATTGAAAGAAGAGAGAAATTATATTCTAGGTATGATTAAGAAGATTAAGGCCACTGGCTGTAACGTTCTGCTGATTCAGAAGAGTATATTGAGAGATGCAGTGACGGATCTCTCGTTGCATTATCTTGCTAAAGCAAAGATTTTGGTGATAAAGGATGTGGAGCGTGATGAAATTGAGTTCATTACAAAGACTCTGAATTGTTTGCCAATTGCAAATATTGAGCATTTCAGGGCAGAGAAGTTGGGTTTTGCGGATTGTGTTGAGGAGGTTTCACTTGGAGATGGGAAGATTGTGAAAATCACTGGCATTAAGGATATGGGTCGGACCACGACTGTGCTTGTTCGTGGGTCGAATATGTTGGTTCTAGATGAGGCAGAACGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGCTTGGTGAACAAGAGGTTTTTGATTGCTGGTGGTGGTGCTCCAGAGATTGAGCTATCGAGGCAGCTTGGTGCTTGGGCAAAGGTGTTGCAGGGAATGGAGAGCTACTGTGTCCGGTCATTTGCAGAGGCTCTTGAAGTTATTCCTTATACCTTGGCTGAGAACGCAGGCTTGAACCCAATATCTATTGTGACCGAGCTTAGGAACCGTCATGCTCAAGGGGAGATCAATGCCGGAATCAATGTGAGGAAGGGACAGATTACAAACATCTTGGAGGAGAATGTGGTGCAGCCACTGCTGGTGAGCACAAGTGCTATCACTCTGGCAACAGAGTGTGTGCGGATGATTTTGAAGATCGATGATATTGTTACAGTGAGGTAG 1602 0.5075 MAAPVAPLVRSSKTESYVDNKRKDDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDIVAGDGTTTVVVIAGALLKQCLSLLSHGIHPTIISDSLHKASIKAVDVLTAMAVPVELSDRESLIKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDPAKPDLVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHTAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGFADCVEEVSLGDGKIVKITGIKDMGRTTTVLVRGSNMLVLDEAERSLHDALCVVRCLVNKRFLIAGGGAPEIELSRQLGAWAKVLQGMESYCVRSFAEALEVIPYTLAENAGLNPISIVTELRNRHAQGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0277 533 NCBIfam thermosome subunit alpha 21 531 - -
Vvi17g0277 533 Gene3D - 147 413 IPR027410 -
Vvi17g0277 533 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Vvi17g0277 533 Gene3D - 34 530 IPR027413 -
Vvi17g0277 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 61 79 IPR017998 GO:0140662
Vvi17g0277 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 415 427 IPR017998 GO:0140662
Vvi17g0277 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 55 IPR017998 GO:0140662
Vvi17g0277 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 381 403 IPR017998 GO:0140662
Vvi17g0277 533 PRINTS Tailless complex polypeptide 1 (chaperone) signature 91 110 IPR017998 GO:0140662
Vvi17g0277 533 PANTHER CHAPERONIN 20 530 IPR017998 GO:0140662
Vvi17g0277 533 ProSitePatterns Chaperonins TCP-1 signature 3. 91 99 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0277 533 NCBIfam thermosome subunit beta 23 531 - -
Vvi17g0277 533 CDD TCP1_delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0277 533 ProSitePatterns Chaperonins TCP-1 signature 1. 42 54 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0277 533 Pfam TCP-1/cpn60 chaperonin family 37 531 IPR002423 GO:0005524
Vvi17g0277 533 SUPERFAMILY GroEL-intermediate domain like 152 412 IPR027410 -
Vvi17g0277 533 SUPERFAMILY GroEL apical domain-like 213 386 IPR027409 -
Vvi17g0277 533 Gene3D GroEL 218 377 IPR027409 -
Vvi17g0277 533 NCBIfam T-complex protein 1 subunit delta 19 532 IPR012717 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi17g0277 533 FunFam T-complex protein 1 subunit delta 218 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0277 Vvi-Chr17 2870999 2872600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0277 201 427 EF-hand Containing Proteins AT3G14270 24.082 1.00e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0277 K09496 - vvi:100262936 996.112