Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0276 ATGCTTATCCGCAACAAAGATGAGCAAGAAGTGGTCTCAACAGAGAAAAAGGACAGACGTGATTTTGAGCAAATTTCAGCACTGGCAACCAGAATGGGCTTATATAGCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAGGTGGTGTTACCTTTTGGGTTGCAAAGAGAAGTACATGCTCATCTTAAAGAATACCTTTCTCAAAAGTCTATGAGCAGGGAAAGTTTTTCAGATAAGACCTTGTCAAGGTCAATTGGTAACAGCAGTGTTACTGAGGAGGGATTTTATGAGCAACAGGAGCCCTTGACACAGACTAGTGTCGTCATGGAACGAATCCTCAAACGGAAAAGTTTGCAAATACGTAATCAACAACAAGATTGGCAGGAATCTTCAGAAGGCCAAAAGATGCAAGAGTTTCGCAGAAGTCTCCCTGCATACAAAGAGAGAGAGGCATTATTAAATGCCATTTCACAAAATCAGGTGGTTGTAGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTCCCTCAGTACATTTTAGAATCTGAGATTGAAGCTGCTCGTGGAGCTTTCTGTAGTATTATTTGTACTCAGCCTAGACGAATATCAGCTATGTCTGTCTCTGAAAGAGTTGCTGCAGAGAGAGGTGAAAAACTGGGAGAATCTGTTGGTTATAAAGTTCGGCTGGAGGGAATGAAAGGGAGGGACACTCGCCTTCTTTTTTGCACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTCCTTATTGTCCTAAAAGACCTGCTTCCTCGTCGGCCAGAATTGAGGCTGATTCTGATGAGTGCAACTCTTAATGCTGAGCTTTTTTCCTCCTACTTTGGTGGTGCTCCAAGTATCCATATTCCTGGGTTTACGTACCCAGTACGAACTCATTTTCTGGAAAATATTCTGGAAATGACTGGATATAGATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAAGGTGTGGAAAATGCAGAAACAAGCTCTCAGAAAGAGAAAGAGCCAAATTGCTTCCTCGGTTGAGGATGCACTTGAAGTTGCTAATTTTGATGCATATAGCCCACGGACACAAGACTCTTTATCCTGTTGGAATCCTGATTCTATTGGTTTTAACCTTATCGAACATGCTCTTTGCCACATAGTTAAAAAAGAAAGACCTGGTGCTGTCTTGGTTTTCATGACTGGTTGGGATGACATAAATTCTTTGAAAGATCAGCTCGAAGCTCATCCTCTCTTGGGAGATCCAAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCCATGGCCAGCTCAGAGCAGAGGTTAATATTTGATAAGCCGGAAGATGGAGTAAGGAAAATAGTTCTTGCTACCAACATGGCTGAGACTAGTATCACCATTAATGATGTGGTTTTTGTGGTCGATTGTGGAAAGGCAAAAGAGACGTCATACGATGCTCTGAATAACACTCCTTGTTTACTTCCTTCTTGGATCTCAAAGGCTTCTGCTCGACAAAGAAGAGGAAGAGCGGGTCGTGTACAACCTGGTGAATGTTACCATCTGTATCCAAAATGTGTATATGATGCTTTTTCTGATTACCAATTGCCAGAACTTCTAAGGACACCTTTACAGTCCCTTTGTTTGCAAATCAAGAGTTTGCAACTTGGAAGTATTTCAGAATTCCTGGCCAGGGCCTTGCAGCCACCAGAACCCTTATCGGTTCAAAATGCCATCGAGTATTTGAAGACCATTGGGGCTTTAGATGAGAATGAGAATTTGACAGTGTTAGGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGCTGGTCTTAGTGTTAGAGATCCGTTCTTGATGCCATTTGACAAGAAGGATCTTGCAGAATCAGCAAAAGCTCTTTTCTCAGGCCGCACCTTCAGTGACCATCTTGCACTTGTCCAAGCCTATGAGGGCTGGAAAGAGGCTGAAAGACAGCAATCTGGATACGAGTACTGTTGGAGAAATTTCCTTTCTGCACAAACTCTAAAAGCTATTGATTCCCTTCGAAGGCAATTCTTTTATTTGCTCAAGGATGCTGGTCTGGTTGAAAACAACACAGAAGCATGCAATAAGTGGAGCCATGATGAGCATCTCATTCGAGCAGTCATTTGTGCAGGCCTGTTCCCTGGGATATGCTCTGTTGTTAACAAGGAAAAATCAATATCATTGAAAACGATGGAGGATGGTCAAGTTCTTCTGTACTCGAATTCGGTGAATGCCCGGGAACCTAAAATTCCATACCCGTGGTTAGTTTTCAATGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTGTATCTGATTCTATGCTTCTTTTATTTGGAGGACGTATTTCCAGAGGGGGAATTGATGGACACCTGAAAATGTTGGGAGGATATTTGGAGTTCTTCATGAAACCTGACTTAGCAGATACATATCTGAGCCTCAAGAAAGAGCTTGAAGAACTAATTCAACAGAAACTTCTGAATCCAACACTGGATGTACACACCAATAATGAGCTGCTATCTGCAGTAAGATTACTGGTTTCAGAGGATGAATGCAATGGCAGGTTTGTCTTTGGCCGCCAGTTGCCTAAGTCTTCAAAACAGGCGATAAAAGAGACCTCGGCTGGTGCACTCTTGAGAAGTGGTGGAGCTGGGGGTGATAATGCAAAGGGTAGGCTGCAAACTGTACTTATCAGGGGTGGACATCAGGCACCAGTCTACAAGACGAGACAACTGAAAAATAACATGTTCCGGTCCACTGTGATCTTCAACGGATTGCAGTTTGCGGGGCAGCCTTGCAGCAGTAAGAAACTTGCGGAAAAGGATGCAGCAGCCAAAGCTCTGGAATGGTTGATGGGCGAGAGACAATCATCCACTGAAGACATTGACCATATGTCAATGCTTCTAAAAAAGAGCAAAGGGAAACGTCGGAAGAGAACTTAA 3174 0.4266 MLIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVVVFSKVPLPNYRSDLDDKRPQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSIGNSSVTEEGFYEQQEPLTQTSVVMERILKRKSLQIRNQQQDWQESSEGQKMQEFRRSLPAYKEREALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGAFCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPSIHIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQALRKRKSQIASSVEDALEVANFDAYSPRTQDSLSCWNPDSIGFNLIEHALCHIVKKERPGAVLVFMTGWDDINSLKDQLEAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQLPELLRTPLQSLCLQIKSLQLGSISEFLARALQPPEPLSVQNAIEYLKTIGALDENENLTVLGRNLSMLPVEPKLGKMLIFGSLFNCLNPIMTVVAGLSVRDPFLMPFDKKDLAESAKALFSGRTFSDHLALVQAYEGWKEAERQQSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNSVFLRDSTAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLLNPTLDVHTNNELLSAVRLLVSEDECNGRFVFGRQLPKSSKQAIKETSAGALLRSGGAGGDNAKGRLQTVLIRGGHQAPVYKTRQLKNNMFRSTVIFNGLQFAGQPCSSKKLAEKDAAAKALEWLMGERQSSTEDIDHMSMLLKKSKGKRRKRT* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0276 1057 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 778 860 IPR011709 -
Vvi17g0276 1057 Gene3D - 113 339 IPR027417 -
Vvi17g0276 1057 SUPERFAMILY dsRNA-binding domain-like 961 1028 - -
Vvi17g0276 1057 Pfam Helicase associated domain (HA2) 622 710 IPR007502 GO:0004386
Vvi17g0276 1057 Pfam DEAD/DEAH box helicase 170 322 IPR011545 GO:0003676|GO:0005524
Vvi17g0276 1057 Pfam Helicase conserved C-terminal domain 429 558 IPR001650 -
Vvi17g0276 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 599 IPR001650 -
Vvi17g0276 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 338 IPR014001 -
Vvi17g0276 1057 SMART DRBM_3 966 1029 IPR014720 -
Vvi17g0276 1057 Gene3D - 601 702 - -
Vvi17g0276 1057 Gene3D - 942 1034 - -
Vvi17g0276 1057 FunFam DExH-box ATP-dependent RNA helicase DExH3 114 339 - -
Vvi17g0276 1057 Pfam Double-stranded RNA binding motif 966 1028 IPR014720 -
Vvi17g0276 1057 SMART helicmild6 453 559 IPR001650 -
Vvi17g0276 1057 CDD DEXHc_RHA-like 177 337 - -
Vvi17g0276 1057 PANTHER ATP-DEPENDENT RNA HELICASE 118 893 - -
Vvi17g0276 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 735 IPR027417 -
Vvi17g0276 1057 FunFam DExH-box ATP-dependent RNA helicase DExH3 421 577 - -
Vvi17g0276 1057 SMART ultradead3 159 352 IPR014001 -
Vvi17g0276 1057 CDD SF2_C_RHA 416 567 - -
Vvi17g0276 1057 FunFam Putative ATP-dependent RNA helicase DHX36 601 705 - -
Vvi17g0276 1057 SMART ha2_5 621 712 IPR007502 GO:0004386
Vvi17g0276 1057 Gene3D - 418 577 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0276 Vvi-Chr17 2822113 2865012 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0276 K14442 - vvi:100244105 2021.51