Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0272 ATGGATTCAGAAGAAGAAATACTGAGTCCATGTGTTTCGGATTCTGATGTTGATGATAAGGATTTGTGGAGGGTAGAGATTGGTGAAGAGGTGAAGAAGCAACTGGCGTTAGCTGGACCTCTAACAATTGTTGGTGTTTTGCGATACTTGACACAGGCTGTGTCTTTGATGTTTGTGGGTCATCTTGGAGAATTACCTCTCGCAAGTGCTTCCATGGCTGCTTCCTTTGCTTCCGTCACTGGTTTCAGCCTTTTGATTGGAATGGGAAGCGCATTGGACACCTTGTGTGGTCAGGCCTATGGAGCAAAACATTATCACATGCTCGGCATTCATATGCAGAGAGCCATGTCTGTTCTTTTACTTGTAAGTGTTCCTCTGGCTTTCATCTGGGCCAAAACTGAGCACATTCTTATGAACCTTGGCCAAGATCCATATATTTCAAGGGGAGCTGGGCGGTATGTTTGGTTCATGATGCCTACACTATTTTCCTGTGGAATTCTACAATGCCTTGTTAGATTTTTGCAAACTCAGAAGATTGTATTTCCAGTGATGCTAATCTCAGCAATTACTACTTTATTTCACTTCCCCACTTGCTGGATCCTGGTTTTCAAGACTAGCCTCGGCAGTGCAGGTGCTGCCTTGGCCTGTTCAATCTCTTCTTGGATCAACGTGTTCCTGTTAGTACTTTATGTCAAGTTCTCACCTGCCTGCAAGCAAACTTGGACTGGCGTTTCTGAAATGAATATTCAAGATGTCCTTAGCTTTCTAAGATTAGCCGTTCCTTCAGCCTCTATGGTCTGTTTAGAGTTCTGGTCATTTCAAGTGTTGATTCTCATTGCTGGTATTCTTCCTAATCCTCAGCTGGAAACATCAGTATTGTCAATCATCCTCACTACATGTGCAATGTTGTTCAATATATACTTGGGAATAGGCAGCGCTGGGAGTATAAGGATTTCAAATGAATTGGGCGCTGGGCGACCACAAAAAGCATACTTGGCAGTACATGCTGTGCTAATCCTGGCCAATGTGTTCGGAATGCTGCTTGGGTCGATCATGTTTTTGTTGCGTCGTACTTGGGGCTACTTGTTTAGCAATAAAGAGGAAGTAGTGAAATATGTTGCCTCCATGATGCCTTTGCTAGCTACTTCAGCCTCATTGGATGCAATCCAGTGTGCACTTTCAGGTATTGTTAGAGGATGTGGGTGGCAGAAGATCGGAGCCATTGTCAATCTGGGAGCTTATTACCTTGTTGGTATCCCTTGTGCTCTTCTTTTTACATTTGACTTTGGCCTTGGAGGGAAGGGGCTTTGGATGGGGATTCTATGCGCGCTCTTTCTGCAAATGTTGTGTCTTCTTGTTGTGACTTTACAAACTAATTGGGAGCAACAGGTAATTGAATTGATTTTTCATTTTGGAAATCAGTGA 1425 0.4358 MDSEEEILSPCVSDSDVDDKDLWRVEIGEEVKKQLALAGPLTIVGVLRYLTQAVSLMFVGHLGELPLASASMAASFASVTGFSLLIGMGSALDTLCGQAYGAKHYHMLGIHMQRAMSVLLLVSVPLAFIWAKTEHILMNLGQDPYISRGAGRYVWFMMPTLFSCGILQCLVRFLQTQKIVFPVMLISAITTLFHFPTCWILVFKTSLGSAGAALACSISSWINVFLLVLYVKFSPACKQTWTGVSEMNIQDVLSFLRLAVPSASMVCLEFWSFQVLILIAGILPNPQLETSVLSIILTTCAMLFNIYLGIGSAGSIRISNELGAGRPQKAYLAVHAVLILANVFGMLLGSIMFLLRRTWGYLFSNKEEVVKYVASMMPLLATSASLDAIQCALSGIVRGCGWQKIGAIVNLGAYYLVGIPCALLFTFDFGLGGKGLWMGILCALFLQMLCLLVVTLQTNWEQQVIELIFHFGNQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0272 474 NCBIfam MATE family efflux transporter 40 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0272 474 Pfam MatE 40 200 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0272 474 Pfam MatE 261 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0272 474 CDD MATE_eukaryotic 30 464 IPR045069 GO:0042910|GO:1990961
Vvi17g0272 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0272 Vvi-Chr17 2780296 2782669 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0272 K03327 - vvi:100256154 764.607