Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0271 ATGGATAGAGAGGATGAGAAGCCAACTCTGAGGTCTCCACTGATCCAAAAATGTGGACAAGATGGCGGAGGAATAAGCATGGAAAAGGTTCTTCTGAGGGAGAAGGTAGTAGTAGAAGTGAAGAAGCAGTTGTGGTTGGCAGGACCTTTGATATCCGTCAGCCTATTGCAGCAGTGTTTGGAGGTGATATCACTGATGTTTGTGGGTCATCTGGGTGACTTGTCTCTCTCGGCTGCTTCCATGGCTACTTCCTTTGCATCTGTCACTGGGTTCAGCTTGTTGATGGGGATGGCAAGTGCATTGGATACCTTATGTGGGCAGTCCTATGGAGCAAAGCAATATCATATGCTCAGTATACACATGCAGAGGGCCATGCTTATTCTTCTAATTGTTAGCATACCTCTTGCTACCATTTGGGCATATACAGGAACCATTCTAATGGCCGTGGGCCAAGATCCTGAGATATCACAAGAAGCCGAACTTTATGCCCGTTTCATGATCCCGAGCCTCTTTGCCTATGGCCTCCTTCAGTGCCTTGTCAGATTCTTGCAAACCCAAAACATAGTCTTCCCAATGATGCTGAGCTCTGGAATCACAACCTTACTGCATGTTCTGGTGTGCTGGTTTCTGGTTTTCAAATCTGGCCTCGGAAGTAAAGGGGCTGCTTTGGCAAATAGCATCTCCTGTTGGATAAATGTTTTATTGCTGGCACTATATGTTAAATTCTCTTCTTCTTGCTCGAAAACTAGGACTGGATTTTCAAAGGAGGCCCTGCATAATATCCCTAGTTTTCTTAGACTTGCTATTCCTTCTGCTGTTATGGTCTGCTTGGAAATGTGGTCATTTGAGCTGATGGTTCTTCTATCTGGTCTCCTTCCTAATCCAAAGTTACAGACTTCAGTGCTTTCGATCTGCCTTTATACTGCTGCAACAGTTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTGAGCACAAGGGTCTCAAATGAACTTGGGGCAGGGCATCCACAAGCTGCACGTTTAGCAGTATTTGTCGTCTTAGTCATGGCCCTAGCTGAAGGCACTCTCATTGGACTACTTCTGATATTGATAAGGAACATCTGGGGCTATGCCTACAGCAATGAAATAGAAGTGGTCACATATGTAGCAGCCATGATGCCAATTCTTGCATTATCCAACTTCCTAGATGGAATGCAGTGTGTTCTTTCAGGCACTGCTAGAGGATGCGGTTGGCAGAAGATTGGTGCCTTTGTCAATCTAGGATCATATTATCTTGTGGGAATTCCATGTGCTATTTTATTAGCTTTTGTCTTCCACATTGAAGGAAGGGTAAGAGTTCACCATTCTCCCTTTTACTAG 1359 0.4496 MDREDEKPTLRSPLIQKCGQDGGGISMEKVLLREKVVVEVKKQLWLAGPLISVSLLQQCLEVISLMFVGHLGDLSLSAASMATSFASVTGFSLLMGMASALDTLCGQSYGAKQYHMLSIHMQRAMLILLIVSIPLATIWAYTGTILMAVGQDPEISQEAELYARFMIPSLFAYGLLQCLVRFLQTQNIVFPMMLSSGITTLLHVLVCWFLVFKSGLGSKGAALANSISCWINVLLLALYVKFSSSCSKTRTGFSKEALHNIPSFLRLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLQTSVLSICLYTAATVWMIPFGLSGAVSTRVSNELGAGHPQAARLAVFVVLVMALAEGTLIGLLLILIRNIWGYAYSNEIEVVTYVAAMMPILALSNFLDGMQCVLSGTARGCGWQKIGAFVNLGSYYLVGIPCAILLAFVFHIEGRVRVHHSPFY* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0271 452 Pfam MatE 49 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0271 452 Pfam MatE 270 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0271 452 NCBIfam MATE family efflux transporter 49 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0271 452 CDD MATE_eukaryotic 39 443 IPR045069 GO:0042910|GO:1990961
Vvi17g0271 452 PANTHER MULTIDRUG RESISTANCE PROTEIN 32 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0271 Vvi-Chr17 2768314 2770594 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0271 K03327 - vvi:100252666 822.772