Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0269 ATGGATAGAGGGGATGAGAAGCCAACTCTGAGGTCTCCTCTGATCCAAAGCTGTGGAGAAGATGGTGGAGAGAGAAGCAAAGGGAAGGTTTTTCAGAGAGATAAGGTAGTAGAAGAAGTGAAGAAGCAGCTGTGGTTGGCAGGACCTTTGATATCTGTCAGCCTTTTGCAGTATTGTTTGCAGCTGATATCTGTGATGTTTGTGGGTCATCTGGGTGAGTTAGCTCTCTCTGGTGCTTCAATGGCTACTTCCTTTGCTTCTGTCACTGGGTCCAGCTTGTTGATGGGGATGGCAAGTGCATTGGATACCTTATGTGGGCAGTCCTATGGAGCAAAGCAGTATCATATGCTCAGTATACACATGCAGAGGGCCATGCTTATTCTTCTAATTGTTAGCATACCTCTTGCTACCATTTGGGCATATACAGGAACCATTCTAATGGCCGTGGGCCAAGATCCTGAGATATCACAAGAAGCCGAACTTTATGCCCGTTTCATGATCCCGAGCCTCTTTGCCTATGGCCTCCTTCAGTGCCTTGTCAGATTCTTGCAAACCCAAAACATAGTCTTCCCAATGATGCTAAGCTCTGGAATCACAACCTTACTGCATGTTCTGGTGTGCTGGTTTCTGGTTTTCAAATCTGGCCTTGGAAGTAAAGGGGCTGCTTTGGCAAATAGCATCTCCTGTTGGATCAATGTTTTATTGTTGGCACTATATGTTAAATTCTCTTCTTCTTGCTCGAAAACTAGGACTGGATTTTCAAAGGAGGCCCTGCATAATATCCCGAGTTTTCTTAGACTTGCTATTCCTTCTGCTGTTATGGTCTGCTTGGAAATGTGGTCATTTGAGCTGATGGTTCTTCTATCTGGTCTCCTTCCTAATCCAAAGTTACAGACTTCAGTGCTTTCGATCTGCCTTAATACTGCTGCAACAGTTTGGATGATCCCCTTTGGACTCAGTGGAGCTGTGAGCACAAGGGTCTCAAATGAACTTGGGGCAGGGCATCCACAAGCTGCACGTTTAGCAGTATTTGTCGTCTTAGTCATGGCCATAGCTGAAGGCACTCTCCTTGGACTACTTCTGATATTGATAAGGAACATCTGGGGCTATGCCTACAGCAATGAAATAGAAGTGGTCAAATATGTAGCAGCCATGATGCCAATTGTTGCATTATCCAACTTCCTAGATGGAATGCAGTGTGTCCTTTCAGGCACTGCTAGAGGATGCGGTTGGCAGAAGATTGGTGCCTTTGTCAATCTAGGATCATATTATCTTGTGGGAATTCCGTGTGCTATTTTATTAGCTTTTGTCTTCCACATTGGAGGCAGGGGCCTCTGGTTGGGGATTATATGTGCGCTCATTGTTCAAGTTTTGTCCCTTCTTATCGTAACTCTACGCACTAACTGGGAGGATGAAGCAAAGAAGGCTACAGATAGAGTCTATGATGCTATAATCCCTATTGAGACAGGGTCATTGAGCTGA 1482 0.4507 MDRGDEKPTLRSPLIQSCGEDGGERSKGKVFQRDKVVEEVKKQLWLAGPLISVSLLQYCLQLISVMFVGHLGELALSGASMATSFASVTGSSLLMGMASALDTLCGQSYGAKQYHMLSIHMQRAMLILLIVSIPLATIWAYTGTILMAVGQDPEISQEAELYARFMIPSLFAYGLLQCLVRFLQTQNIVFPMMLSSGITTLLHVLVCWFLVFKSGLGSKGAALANSISCWINVLLLALYVKFSSSCSKTRTGFSKEALHNIPSFLRLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLQTSVLSICLNTAATVWMIPFGLSGAVSTRVSNELGAGHPQAARLAVFVVLVMAIAEGTLLGLLLILIRNIWGYAYSNEIEVVKYVAAMMPIVALSNFLDGMQCVLSGTARGCGWQKIGAFVNLGSYYLVGIPCAILLAFVFHIGGRGLWLGIICALIVQVLSLLIVTLRTNWEDEAKKATDRVYDAIIPIETGSLS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0269 493 CDD MATE_eukaryotic 39 475 IPR045069 GO:0042910|GO:1990961
Vvi17g0269 493 MobiDBLite consensus disorder prediction 1 26 - -
Vvi17g0269 493 Pfam MatE 49 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0269 493 Pfam MatE 270 432 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0269 493 NCBIfam MATE family efflux transporter 49 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi17g0269 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0269 Vvi-Chr17 2744210 2747536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0269 K03327 - vvi:100257810 955.666