Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0260 ATGGCATCGGAGAAGGAGATGAGAAACATAGGTGAAGCACACCCAATGAAGAGTGGAGATGGTCTTTATAGCTACTCCAACAACTCTTACTTACAGAGAGGAGTTATGAACGCTGCCAAGCAAATTGTGAGTGAGGCAATTGTGGAAAACCTTGACATCCTCAAATTTTCTCCTTCAACCACCGTAAGGGTGGCTGACCTGGGTTGTTCAGTTGGGCCTAACACCTTCTTTGCAGTGCAAAACATACTGGAAGCTATTGAGCTCGAGTGCCAAAACCAAGGGCTCGATTCCCAAATCCCTGAATTCCAAGTCTTCTTTAATGATCACACCTCCAACGACTTCAACTCTCTATTCTCATCCCTCCCTCCCAATAGGCGATATCACGCTGCTGGGGTTCCGGGTTCTTTCTACTCTCGCCTGTTTCCCAATCGCTCTCTTCATATTGTTCATTCATCCTGCGCCATTCAGTGGCTTTCAAGAGTGCCAAAGAAGGTGGTGGACAGAAGTTCTCAAGCCTGGAACAAAGGAAGGATCTATTACCCAAGTGCTGCGGATGAAGTTGTTGAGGCCTATTCAGCTCAGTGTGCAGAGGACATGGCACGGTTTTTGCAGGCGAGGGCACAAGAGATTGCAGATGGAGGGTTGATGATCCTAATCTTTGCAGCCCGCCCTGATGAAATTCCTCATTCTCAACTCGTTGCCAATATAATGCACGACATGTTGGGATGTTGCCTCATGGACATGGCCAAAAAGGGAATAGTAAGCGAAGAGAAAGTGGATATGTTCAACTTGCCAGTGTATCACATGTCTGATCAAGAGCTGGAAGCGGCTGTAGAGAGAAATGGATGTTTCAGCATTGAGAGAATGGAGAGCCTACCTCCCATCTCAAGTACTTTACAGTCACTTGTAAGCACTCGTCATAAAGCCCAAGCAATCTCATTCCACGTAAGAGCTGCCATGGAGGACCTCATCAAGGCACATTTTGGAGAAGAGATCCTGGATCAACTCTTTGACTCGTATTCTAAAAAACTTGAACAAGAGTATTCCCTGATTGAGTCAGCTGGGACATCAGCACTGAACTTGTGTGCTGTGCTCAAACGCAAACTATGA 1110 0.4649 MASEKEMRNIGEAHPMKSGDGLYSYSNNSYLQRGVMNAAKQIVSEAIVENLDILKFSPSTTVRVADLGCSVGPNTFFAVQNILEAIELECQNQGLDSQIPEFQVFFNDHTSNDFNSLFSSLPPNRRYHAAGVPGSFYSRLFPNRSLHIVHSSCAIQWLSRVPKKVVDRSSQAWNKGRIYYPSAADEVVEAYSAQCAEDMARFLQARAQEIADGGLMILIFAARPDEIPHSQLVANIMHDMLGCCLMDMAKKGIVSEEKVDMFNLPVYHMSDQELEAAVERNGCFSIERMESLPPISSTLQSLVSTRHKAQAISFHVRAAMEDLIKAHFGEEILDQLFDSYSKKLEQEYSLIESAGTSALNLCAVLKRKL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0260 369 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 15 348 IPR005299 GO:0008168
Vvi17g0260 369 FunFam SABATH methyltransferase 1 28 169 - -
Vvi17g0260 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 368 IPR029063 -
Vvi17g0260 369 Gene3D Vaccinia Virus protein VP39 28 295 IPR029063 -
Vvi17g0260 369 Pfam SAM dependent carboxyl methyltransferase 58 367 IPR005299 GO:0008168
Vvi17g0260 369 Gene3D - 16 349 IPR042086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0260 Vvi-Chr17 2681963 2684018 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0260 - - vvi:100264510 733.406