LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0255	ATGGCTGAATCGTTTGCTTTTGCCATAGCTGAGAGTGTTTTGGGGAAGTTGGGCTCTACCCTCATCCAAGAAGTTGGCCTTGCTTGGGGTGTTAAAACCGAGCTGGGAGAGCTCAAGGATACTTTATCCACCATCCACGCCCTGCTCTTGGACGCTGAGGAGAAGCAAGCAACCAATCTTCAGATTAGCGATTGGCTTGGAAAGCTCAAACTCGTCCTTTATGATGCAGAGGATGTGCTCGATGAATTTGACTATGAAGCTTTGCGGCAGCAGGTGGTGGCCAGCGGATCAAGCATTAGGTCAAAGTCTAAATTTAATCTCTCCGAGGGAATTGCAAACACCCGTGTAGTGCAGAGGGAGACCCACTCCTTCGTCCGAGCATCCGATGTCATCGGAAGAGACGACGATAAAGAAAATATTGTTGGGCTTTTGAAGCAATCCAGTGATACAGAGAATATTTCTGTTATTCCCATAGTTGGGATTGGGGGGCTAGGCAAGACATCTCTGGTTAAACTTGTGTATAACGATGAGAGGGTAGTGGGCCATTTCTCAATTAAAATGTGGGTTTGCGTGTCAGATGAGTTTGATGTTAAAAAGCTGGTAAAGGAAATCCTTAAGGAGATCAAAGGTGATGAAAATTACAGTGACTTCTCCTTGCAGCAGCTGCAGAGTCCTCTTAGAAATGCATTAGATGGTGAAAAGTTCTTGCTGGTTTTGGATGACGTGTGGAATACAGATCGTGAGAAGTGGCTTGAGCTGAAAGACTTGCTCATGGACGGTGCCAAAGGAAGCAAAATTCTTGTAACTACACGCAAGAAGTCAATTGCTTCAATCATGGGCACTTTTCCCATGCAAGAAATAAAGGGTCTTTCTCATGAGGATTGTTTGTCTTTATTTGTGAAATGCGCATTCATGGATGGAGAAGAAAAACGATATCCAACCCTTTTAAAAATCGGGGACCAGATTGTTGAGAAATGTGCAGGGGTTCCTCTGGCTGTGAGAAGTTTAGGGAGTTTACTGTATTCGAAAAGGGATGAATGGGATTGGGTATCCATTAGAGATAGCGAAATATGGGAATTAGAACAAAATGAAGATGGTATTATGGCTGCGTTAAGACTGAGCTATTATGATTTGCCTTATCACTTGAAACAATGCTTTGCTCTTTGTTCCCTATTTCCCAAAGATTATGAATTTAGTAATGTTGTTTTGATCTCAACTTGGATGGCAGAAGGCCTCATTCATTCATCGGGACAAAATGCCAAAATGGAGGATATTGGTGAGAGATATATTAATGAGCTATTATCGAGATCTTTCTTTCAAGATGTTGAGCAGCTGATACTAGGAGTACTATATACATTCAAAATGCACGATCTTGTACATGATCTTGCGATGTTTTTTGCACAACCTGAGTGTTTAATACTAAATTTTCATAGTAAAGATATTCCTAAAAGGGTTCAACACGCCGCATTTTCTGATACCGAGTGGCCCAAAGAAGAGTGTAAAGCTTTAAAATTCTTGGAGAAGTTGAATAATGTTCATACCATTTATTTTCAAATGAAAAATGTGGCCCCTAGAAGCGAATCATTTGTTAAGGCATGCATCTTGAGATTCAAATGTATACGGATATTGGATTTACAAGACTCTAACTTTGAAGCATTGCCTAAATCTATTGGTAGTCTGAAGCATCTAAGATTTTTGGACTTAAGTGGAAATAAGAGAATCAAGAAACTCCCTAATTCCATTTGTAAGTTATACCATTTGCAAGCTTTGTCACTCTCACGATGTTCAGAACTTGAAGAATTACCAAGAGGCATAGGGAGTATGATCAGTTTGAGGATGGTATCTATAACAATGAAACAAAGGGATTTATTTGGAAAGGAAAAAGGGTTGAGAAGCTTGAATTCTCTTCAACGATTAGAGATTGTTGATTGTCTCAATTTGGAATTTTTGTCTAAAGGAATGGAAAGCCTTATTGAACTTCGAATGTTAGTCATTACCGATTGTCCAAGTTTGACATTCAAAGCTTTGGGAGCCTACAAATTTTGTTCTTTGACAATTTACCACAATTGGAGGCTTTACCGAGGTGGCTTCTTCATGAGCCAACTTCTAACACTCTACACCATTTAA	2127	0.4001	MAESFAFAIAESVLGKLGSTLIQEVGLAWGVKTELGELKDTLSTIHALLLDAEEKQATNLQISDWLGKLKLVLYDAEDVLDEFDYEALRQQVVASGSSIRSKSKFNLSEGIANTRVVQRETHSFVRASDVIGRDDDKENIVGLLKQSSDTENISVIPIVGIGGLGKTSLVKLVYNDERVVGHFSIKMWVCVSDEFDVKKLVKEILKEIKGDENYSDFSLQQLQSPLRNALDGEKFLLVLDDVWNTDREKWLELKDLLMDGAKGSKILVTTRKKSIASIMGTFPMQEIKGLSHEDCLSLFVKCAFMDGEEKRYPTLLKIGDQIVEKCAGVPLAVRSLGSLLYSKRDEWDWVSIRDSEIWELEQNEDGIMAALRLSYYDLPYHLKQCFALCSLFPKDYEFSNVVLISTWMAEGLIHSSGQNAKMEDIGERYINELLSRSFFQDVEQLILGVLYTFKMHDLVHDLAMFFAQPECLILNFHSKDIPKRVQHAAFSDTEWPKEECKALKFLEKLNNVHTIYFQMKNVAPRSESFVKACILRFKCIRILDLQDSNFEALPKSIGSLKHLRFLDLSGNKRIKKLPNSICKLYHLQALSLSRCSELEELPRGIGSMISLRMVSITMKQRDLFGKEKGLRSLNSLQRLEIVDCLNLEFLSKGMESLIELRMLVITDCPSLTFKALGAYKFCSLTIYHNWRLYRGGFFMSQLLTLYTI*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0255	708	Pfam	Rx N-terminal domain	11	99	IPR041118	-
	Vvi17g0255	708	FunFam	Probable disease resistance protein At1g61300	113	282	-	-
	Vvi17g0255	708	FunFam	Probable disease resistance protein At1g63360	375	465	-	-
	Vvi17g0255	708	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	119	389	IPR027417	-
	Vvi17g0255	708	Pfam	NB-ARC domain	134	375	IPR002182	GO:0043531
	Vvi17g0255	708	ProSiteProfiles	Leucine-rich repeat profile.	562	584	IPR001611	GO:0005515
	Vvi17g0255	708	CDD	RX-CC_like	6	91	IPR038005	-
	Vvi17g0255	708	Pfam	Leucine rich repeat	541	595	IPR001611	GO:0005515
	Vvi17g0255	708	Gene3D	-	114	282	IPR027417	-
	Vvi17g0255	708	PANTHER	DISEASE RESISTANCE PROTEIN RP	35	655	IPR044974	GO:0006952
	Vvi17g0255	708	Gene3D	-	374	464	IPR036388	-
	Vvi17g0255	708	Gene3D	-	289	373	IPR042197	-
	Vvi17g0255	708	PRINTS	Disease resistance protein signature	229	243	-	-
	Vvi17g0255	708	PRINTS	Disease resistance protein signature	558	574	-	-
	Vvi17g0255	708	PRINTS	Disease resistance protein signature	155	170	-	-
	Vvi17g0255	708	PRINTS	Disease resistance protein signature	326	340	-	-
	Vvi17g0255	708	SUPERFAMILY	L domain-like	454	684	-	-
	Vvi17g0255	708	Gene3D	-	10	113	-	-
	Vvi17g0255	708	Gene3D	Ribonuclease Inhibitor	478	689	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0255	Vvi-Chr17	2591274	2593611	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0255	424	620	Receptor kinase-like Gene Family	AT1G47890	23.810	1.29e-09	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0255	-		-	vvi:100245709	1097.03