Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0253 ATGATGGAAAATTGGGGAGATCGGCTCAGATTTACACAGTCATCCCTTTGGGCAAGAGAGTCACTTCTGGCTTTACAAAGATTAGTTCTTGGTGCAAGCGGTCTTGGTGTTCAAGTTGGTGATTGTTGGCTTCAATATGCAAAGCTCTGCCGTTCAGCTGGTTATTATGAGACAGCTAACCAAGCAATTCTGGAAGCTCAGGCTTCAGGTCCACCTAAAGCTCACATGGAGAAAGCTTCGCTGGGTTCTTCTTCATTGAACAGTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACAAATTGGTCGGCTGGAAGTAGGCAGCGAGATTGTGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAGGAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTTTGCACAGACAGTGCGGTTTATGCAGAAGGACCAACTAGGCCTACTGGAGGAGCAGCTGCTATTGCTATGCTAGAAGGGCCTGATGCTCCTATTGCATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGCATTTTCCTCTCTTCTAA 717 0.4407 MMENWGDRLRFTQSSLWARESLLALQRLVLGASGLGVQVGDCWLQYAKLCRSAGYYETANQAILEAQASGPPKAHMEKASLGSSSLNSLTVVTSLLEKYGIDPKQIGRLEVGSEIVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPTRPTGGAAAIAMLEGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPHFPLF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0253 238 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 136 151 IPR000590 GO:0004421|GO:0008299
Vvi17g0253 238 Gene3D - 83 236 IPR016039 GO:0016746
Vvi17g0253 238 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 88 233 - -
Vvi17g0253 238 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 206 233 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi17g0253 238 FunFam - 83 236 - -
Vvi17g0253 238 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 88 205 IPR013528 -
Vvi17g0253 238 Pfam FAT domain 1 78 IPR003151 GO:0005515
Vvi17g0253 238 SUPERFAMILY Thiolase-like 88 201 IPR016039 GO:0016746
Vvi17g0253 238 CDD init_cond_enzymes 90 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0253 Vvi-Chr17 2565691 2575688 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0253 K01641 - vvi:104882418 302.753