Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0252 ATGCATCATCTTCTTGCTTTCTATAGATATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTTCGTATTTCACTCTCCATATAATAAGCTTGTACAGAAAAGTTTTGCTCGATTAGTGTTCAATGATGTTGTGAGAAATGCCAGAGGTGATCGAGAAGTCCACAAAGAAACAGAGGAGAAACCGGGTTGGTGCCCTAACCCACATTTGCCTCCCTGTTTATTGAGATCATGGCTCCTGTATTTTCTAGAGATGCATGGCGGTGTGTGTGGCATATGCTTTAGAATGACCTGGTACATGGTTGGGGTCTTGACTTTGCTCTCAGAAGATGTGTAG 348 0.4253 MHHLLAFYRYEKLEGKQFSIADADYFVFHSPYNKLVQKSFARLVFNDVVRNARGDREVHKETEEKPGWCPNPHLPPCLLRSWLLYFLEMHGGVCGICFRMTWYMVGVLTLLSEDV* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0252 115 Gene3D - 3 72 IPR016039 GO:0016746
Vvi17g0252 115 SUPERFAMILY Thiolase-like 13 47 IPR016039 GO:0016746
Vvi17g0252 115 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 14 65 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi17g0252 115 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 10 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0252 Vvi-Chr17 2564537 2565658 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0252 K01641 - vvi:100244379 92.8189