Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0248 ATGGCCGAAACCCTAGTTCTCCGCGGTACGATGAGAGCCCACACCGATATGGTGACGGCCATCGCCACCCCAATTGACAACTCCGACATGATCGTCACTTCCTCACGAGACAAGTCCATCATCCTCTGGCACCTCACCAAGGATGACAAGACCTATGGCGTCCCCCGTCGCCGCCTTACCGGCCATTCCCATTTTGTTCAGGACGTTGTCCTCTCCTCCGACGGCCAGTTCGCTCTTTCCGGAAGCTGGGACGGTGAGCTCCGCCTCTGGGATCTCGCTGCCGGCACCTCCGCCCGTCGCTTCGTCGGTCACACCAAGGACGTCCTTTCCGTGGCTTTCTCTGTTGATAACCGCCAGATCGTGTCGGCTTCGCGTGACCGCACCATCAAGCTCTGGAACACTCTTGGTGAGTGCAAGTACACCATCCAGGACGCTGATGCACACTCCGATTGGGTGAGCTGCGTCCGATTCAGCCCTAACAACCTGCAGCCGACGATTGTGTCTGCCTCTTGGGATCGGACAGTGAAAGTCTGGAACTTGACGAACTGCAAGCTCCGGGCCACTCTGGCCGGTCACGGCGGCTATGTGAACACAGTGGCGGTGTCACCAGACGGGTCCCTGTGCGCGAGTGGAGGCAAGGATGGAGTGATTCTTTTGTGGGATTTGGCCGAGGGAAAGAGGCTATACTCGCTCGATGCAGGAGCGATTATTCACGCTTTGTGTTTCAGCCCTAATAGGTACTGGCTTTGCGCTGCTACGGAGCAGAGTATCAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATTTGAAGGTTGATCTCAAGACCGAGGCTGAAAAGAGCGAAGATACCACCACTACTGCCAAGAAGAAGGGAAAGATCATATATTGCACAAGCTTGAGCTGGAGCGCAGATGGAAGCACATTGTTTAGTGGGTACACGGATGGTGTAGTCAGAGTTTGGGGAATTGGCCGTTACTAG 984 0.5549 MAETLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWHLTKDDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIQDADAHSDWVSCVRFSPNNLQPTIVSASWDRTVKVWNLTNCKLRATLAGHGGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAIIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEAEKSEDTTTTAKKKGKIIYCTSLSWSADGSTLFSGYTDGVVRVWGIGRY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 327 IPR001680 GO:0005515
Vvi17g0248 327 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Vvi17g0248 327 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Vvi17g0248 327 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Vvi17g0248 327 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Vvi17g0248 327 CDD WD40 7 322 - -
Vvi17g0248 327 FunFam Receptor for activated C kinase 1 8 327 - -
Vvi17g0248 327 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 324 IPR045223 GO:0043022|GO:0045182
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 327 - -
Vvi17g0248 327 Gene3D - 4 327 IPR015943 GO:0005515
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 92 - -
Vvi17g0248 327 SUPERFAMILY WD40 repeat-like 4 324 IPR036322 GO:0005515
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 138 179 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 299 322 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Vvi17g0248 327 Pfam WD domain, G-beta repeat 236 261 IPR001680 GO:0005515
Vvi17g0248 327 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Vvi17g0248 327 SMART WD40_4 288 323 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 224 261 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 4 44 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 135 179 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 94 133 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 52 91 IPR001680 GO:0005515
Vvi17g0248 327 SMART WD40_4 182 221 IPR001680 GO:0005515
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Vvi17g0248 327 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Vvi17g0248 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0248 99 327 Miscellaneous Gene Families AT5G08390 22.845 1.30e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0248 K14753 - vvi:100249027 663.685