Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0236 ATGGCTGCTTCGGTAGACCCTCTGGTTGTTGGTCGCGTGATTGGCGATGTGGTTGACATGTTCGTCCCTACCATCAACATGTCTGTATACTACGGAGCTAAGCATGTCACTAATGGCTGTGATGTTAAGCCATCCCTAACTGTGAATCCTCCCAAAGTGACCCTTTCAGGCCATCCCGATGAATTTTACACCCTGGTGATGACCGACCCTGATGCACCCAGCCCCAGTGAGCCCTCCATGAGGGAGTGGGTACACTGGATAGTTGCAGATATTCCGGGAGGAACCAATGCCACCCGCGGGAAAGAGGCTCTCCCTTATGTAGGGCCACGCCCACCAGTGGGCATTCACCGCTACATACTGGTGCTGTTTCAGCAGAAGGCTCCTTTAGGCTTGGTGGAGCAGCCTGGGTCAAGGGCCCACTTCAGCACCCGTGCCTTTGCCAACCAGCTGGATCTGGGGCTGCCTGTGGCTACCGTCTACTTCAACGCCCAGAAGGAGCCAGCAAACAGGAGGCGCTGA 519 0.5588 MAASVDPLVVGRVIGDVVDMFVPTINMSVYYGAKHVTNGCDVKPSLTVNPPKVTLSGHPDEFYTLVMTDPDAPSPSEPSMREWVHWIVADIPGGTNATRGKEALPYVGPRPPVGIHRYILVLFQQKAPLGLVEQPGSRAHFSTRAFANQLDLGLPVATVYFNAQKEPANRRR* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0236 172 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 11 166 IPR035810 -
Vvi17g0236 172 Pfam Phosphatidylethanolamine-binding protein 48 160 IPR008914 -
Vvi17g0236 172 FunFam Terminal flower 1 1 172 - -
Vvi17g0236 172 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 63 85 IPR001858 -
Vvi17g0236 172 SUPERFAMILY PEBP-like 12 165 IPR036610 -
Vvi17g0236 172 CDD PEBP_euk 26 163 IPR035810 -
Vvi17g0236 172 Gene3D - 2 172 IPR036610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0236 Vvi-Chr17 2414314 2415977 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0236 - - vvi:100853664 356.681