Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0232 ATGGAGGGCTGCCACCACCAGTCTTCCAGGCTGTTGATGATGGGGATATTGTTTCTGGCTGTGATTTTTCCGTCATCTTCTTCGCCGACTACACGTCGGTTTCAATTTAATGTTCAATGGAAGAAGGTAACCCGTCTGTGCCATACAAAGCCACTTCTTACAGTAAATGGGAAGTATCCAGGGCCAACCATTGCTGTTCATGAAGGTGACAATGTTGAAGTTAAGGTTACTAACCTTATTGCCACCAACACAACCATTCATTGGCATGGAATAAGGCAACTGAGGACAGGTTGGGCCGATGGTCCTGCTTACGTTACACAATGCCCCATCAGAGGAGGGCAGTCGTACACATACAAGTTCAGTGTGGTGGATCATAGGGGCACACTCCTGTGGCATGCTCATTACTCGTGGCAGCGGGTGTCCGTCTATGGCGCCTTCATCATCTATCCCCGCATGCCATATCCATTCAAAGCTCCTATTCAAGATGAAGTCCCCATTATATTTGGTGAATGGTGGAATGACGATGCGGAAGAAGTGGAAAGGGAGATGATGAGGACTGGAGATGGGCCCAAGATCTCAGAAGCTTACACCATTAATGGCATGCCTGGACCCCTCTATCCCTGCTCTAACAAAGATACTTTCATCCAGAATGTGGTTCCTGGCAAAACCTACTTGCTTCGTATCATCAATGCAGCACTCAACGCTGAGCTTTTCTTCGCCATTGCTAATCACACATTGACTGTCGTAGAGATTGATGGGTTGTACACAAAACCCTTTACGACCACAGCCATTATGATCGCTCCAGGACAAACCACCAATGTTCTGCTCACAGCGGATCAAGTTCCCGACTCTTCTGCCATGTTTCCCATGGCTGCAAACAATTATGTCACCTCCATTTTTCCATTCGATAATTCAACCACAATGGGCTTCTTACGCTACAAAACTATTACAAACCCAAGAGCTAAACCCCTAAACAGACCAGCTGTATACAGTCTCTCATCACTTTACAATCTTCCTCAAATGAAAGATACAGCTTTTGCCACTGGATTTTCGAGCAAGCTCCGAAGCCTTGCTTCTGCTCAGTACCCATGTAACGTGCCCAAGACTATTGATAAGCGAATAGTGACCACCATAAGCCTAAACCTTCAAGACTGTCCAGCCAATCAGACCTGCAAGGGCTACAACGGAAAGAGGTTCTTCGCTTCAATGAACAACCAGTCCTTTATTCGTCCTTTCGAATCCATACTAGAATGCCACTACAAAAACCTAACAAACCACTTGTTCTCATCCGATTTTCCCGAGAAACCACCAACCACTTTCGACTACACGGGCGTCAATCCGTTCACTTCAAACATGAACACCCAGTTTGGCACCAAGCTTTTGGTGGTTCCCTATGGCAGCAGCTTGGAAATTGTTATGCAGGGAACGAGTTTTCTCAGTGTGGAGAACCATCCTATCCATTTCCACGGCCACAACTTCTTCATAGTCGGGAGGGGGTTCGGAAACTTTGATGTTAATAAGGATCCACAGAACTACAACCTTGTTGATCCTCCGGAGAGGAACACGGTGGCAGTTCCAACCGGAGGGTGGGCTGCAATCCGGTTCAAGGCTGATAACCCAGGAGTATGGTTCATACATTGCCATCTTGAAGAACACACTTCATGGGGTCTAGCTATGGGACTGGTGGTTCAAAATGGCCCCAATCCATCTCAGTGCTTGCTGCCTCCTCCTGCAGATCTTCCGTCATGTTAG 1752 0.4715 MEGCHHQSSRLLMMGILFLAVIFPSSSSPTTRRFQFNVQWKKVTRLCHTKPLLTVNGKYPGPTIAVHEGDNVEVKVTNLIATNTTIHWHGIRQLRTGWADGPAYVTQCPIRGGQSYTYKFSVVDHRGTLLWHAHYSWQRVSVYGAFIIYPRMPYPFKAPIQDEVPIIFGEWWNDDAEEVEREMMRTGDGPKISEAYTINGMPGPLYPCSNKDTFIQNVVPGKTYLLRIINAALNAELFFAIANHTLTVVEIDGLYTKPFTTTAIMIAPGQTTNVLLTADQVPDSSAMFPMAANNYVTSIFPFDNSTTMGFLRYKTITNPRAKPLNRPAVYSLSSLYNLPQMKDTAFATGFSSKLRSLASAQYPCNVPKTIDKRIVTTISLNLQDCPANQTCKGYNGKRFFASMNNQSFIRPFESILECHYKNLTNHLFSSDFPEKPPTTFDYTGVNPFTSNMNTQFGTKLLVVPYGSSLEIVMQGTSFLSVENHPIHFHGHNFFIVGRGFGNFDVNKDPQNYNLVDPPERNTVAVPTGGWAAIRFKADNPGVWFIHCHLEEHTSWGLAMGLVVQNGPNPSQCLLPPPADLPSC* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0232 583 ProSitePatterns Multicopper oxidases signature 1. 541 561 IPR033138 -
Vvi17g0232 583 Gene3D - 161 360 IPR008972 -
Vvi17g0232 583 PANTHER MULTI-COPPER OXIDASE 36 571 IPR045087 -
Vvi17g0232 583 Pfam Multicopper oxidase 163 314 IPR001117 -
Vvi17g0232 583 NCBIfam laccase 31 583 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi17g0232 583 SUPERFAMILY Cupredoxins 161 359 IPR008972 -
Vvi17g0232 583 FunFam Laccase 161 360 - -
Vvi17g0232 583 Pfam Multicopper oxidase 37 151 IPR011707 GO:0005507
Vvi17g0232 583 SUPERFAMILY Cupredoxins 24 181 IPR008972 -
Vvi17g0232 583 Gene3D - 375 583 IPR008972 -
Vvi17g0232 583 ProSitePatterns Multicopper oxidases signature 2. 546 557 IPR002355 GO:0005507
Vvi17g0232 583 CDD CuRO_2_LCC_plant 164 313 IPR034285 -
Vvi17g0232 583 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Vvi17g0232 583 CDD CuRO_3_LCC_plant 428 566 IPR034289 GO:0005507
Vvi17g0232 583 Gene3D - 21 150 IPR008972 -
Vvi17g0232 583 Pfam Multicopper oxidase 432 565 IPR011706 GO:0005507|GO:0016491
Vvi17g0232 583 SUPERFAMILY Cupredoxins 364 583 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0232 Vvi-Chr17 2388650 2392759 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0232 K05909 - vvi:100853765 1222.99