Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0231 ATGGCAATGCGCGGGAGCAACCGCTTCAGACAGTTACACAGCAGAAGCTGCCTACGCTCCCTCCAAACAACCACCACTGCAAATCGGAAGCCGTCAACAAGAAACCAACCCAAAACGACGTCGTCCCTCGCCACTGACGCCGACATTGTCAAATGGAACATTGCCATCACCAACCACATGCGAAACGGACAATGCGACTCCGCTCTCCGCCTCTTCAACTCCATGCCTCGCCGGAGTTCGATTTCTTGGAACGCCATGATCTCCGGTTGCTTATCGAATGATAAATTTTATCTCGCTCGCCAGTTGTTTGAGAAAATGCCCACAAGAGACTTGGTTTCATGGAATGTGATGATTAGTGGGTGTGTCCGGTATCGGAATCTACGGGCTGCGCGTTTGTTATTTGATCAAATGCCTGAAAGGGATGTCGTTTCGTGGAATGCGATGTTATCCGGTTATGCGCAGAATGGGTATGTGAAGGAGGCTAAGGAGATTTTTGATGAGATGCCATGTAAGAATTCAATATCTTGGAATGGAATGCTTGCAGCGTATGTGCAGAATGGACGGATAGAGGATGCGCGGAGGCTATTTGAGTCCAAAGCGGATTGGGAGTTGATTTCTTGGAACTGTATGATGGGTGGATATGTGAAGAGGAATAGGTTGGTTGATGCGAGGGGGATTTTTGATAGAATGCCAGAGAGGGATGAAGTTTCATGGAATACTATGATTTCGGGATATGCCCAGAATGGGGAGTTGTTGGAAGCACAGAGATTGTTTGAAGAGTCTCCAGTTCGGGATGTCTTCACTTGGACAGCAATGGTGTCAGGATATGTGCAGAATGGGATGTTGGATGAAGCAAGAAGAGTTTTTGATGGAATGCCGGAGAAGAATTCAGTTTCGTGGAATGCTATTATCGCAGGTTATGTGCAATGTAAGAGAATGGACCAGGCAAGGGAGTTGTTTGAGGCTATGCCTTGTCAGAATGTTTCTTCTTGGAATACAATGATTACTGGCTATGCACAGAATGGTGATATTGCTCAAGCTAGGAATTTTTTTGACAGGATGCCTCAGCGTGATTCCATCTCATGGGCAGCTATTATTGCTGGATATGCCCAAAGTGGCTATGGTGAAGAGGCTTTGCATCTATTTGTGGAGATGAAGAGAGATGGCGAAAGATTGAATAGGTCTACATTTACAAGTACTTTGAGCACATGTGCTGAGATAGCTGCTTTGGAATTGGGGAAGCAAGTACATGGACGGGTTGTAAAGGCAGGATTGGAAAGTGGGTGTTATGTGGGGAATGCACTTCTTGTAATGTATTGTAAGTGTGGAAACATAGACGATGCATACATTGTGTTTGAGGGAATTGAAGAAAAAGAAGTTGTGTCATGGAATACAATGATTGCTGGTTATGCAAGACATGGATTTGGCAAAGAGGCTCTGATGCTTTTTGAGTCAATGAAGAAAACCGGTATCCTACCAGATGATGTCACAATGGTTGGCGTTTTATCTGCATGTAGCCATACTGGCTTAGTAGACAAAGGCACAGAGTATTTTTATTCAATGACTCAAGATTATGGTATAACTGCAAATTCAAAACACTACACTTGCATGATTGATCTTCTGGGAAGAGCAGGGCGCCTGGATGATGCCCAAAATCTAATGAAGAACATGCCTTTTGAACCTGATGCTGCAACATGGGGTGCTTTACTTGGTGCTAGCAGGATTCATGGCAATACAGAGTTGGGTGAAAAGGCTGCTAAGATGATTTTTGAGATGGAACCTGATAATTCAGGAATGTATGTTCTTCTTTCAAACTTATATGCAGCTTCTGGGAGGTGGGGTGATGTTGGTAGGATGAGATTAAGAATGAGGGATAGAGGTGTGAAGAAAGTGCCCGGGTATAGTTGGGTTGAAGTGCAAAACAAGATTCACACATTTACAGTTGGGGATTCTGTTCACCCAGAGAGGGATAGGATATACACCTTTTTGGAAGAGTTGGATCTCAAGATGAAGAAGGAGGGTTATGTTTCTTCTACAAAGTTGGTTTTACATGACGTAGAAGAGGAGGAGAAGGTGCATATGCTCAAGTATCATAGTGAAAAACTAGCAGTTGCATTTGGAATACTGGCCATTCCTGCTGGAAGACCAATCCGTGTGATAAAGAATTTGCGGGTGTGTGAAGATTGTCACAATGCAATGAAACACATATCCAAGATTGTGGGAAGGTTGATAATCTTAAGGGATTCTCACCGCTTTCATCACTTTAATGGGGGTCAATGTTCTTGTGGGGACTATTGGTGA 2301 0.4402 MAMRGSNRFRQLHSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Vvi17g0231 766 Pfam E motif 576 638 IPR046848 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 205 234 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 330 357 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 174 197 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 461 494 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 81 111 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 298 328 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 143 171 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 267 296 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 112 143 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 236 260 IPR002885 -
Vvi17g0231 766 NCBIfam pentatricopeptide repeat 360 393 IPR002885 -
Vvi17g0231 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 264 703 IPR046960 GO:0003723|GO:0009451
Vvi17g0231 766 MobiDBLite consensus disorder prediction 20 42 - -
Vvi17g0231 766 Pfam PPR repeat family 358 405 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat family 459 506 IPR002885 -
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 42 201 IPR011990 GO:0005515
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein 327 409 - -
Vvi17g0231 766 Pfam DYW family of nucleic acid deaminases 674 766 IPR032867 GO:0008270
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 202 262 IPR011990 GO:0005515
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 327 408 IPR011990 GO:0005515
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 263 326 IPR011990 GO:0005515
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein 202 264 - -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein 527 704 - -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 264 IPR002885 -
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein 265 326 - -
Vvi17g0231 766 SUPERFAMILY TPR-like 213 360 IPR011990 GO:0005515
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 524 702 IPR011990 GO:0005515
Vvi17g0231 766 Gene3D Tetratricopeptide repeat domain 409 523 IPR011990 GO:0005515
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein 140 200 - -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Vvi17g0231 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vvi17g0231 766 FunFam Pentatricopeptide repeat-containing protein mitochondrial 411 522 - -
Vvi17g0231 766 Pfam PPR repeat 298 325 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 330 357 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 112 141 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 433 458 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 143 171 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 174 197 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 236 260 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 267 296 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 533 557 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 52 78 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 205 233 IPR002885 -
Vvi17g0231 766 Pfam PPR repeat 81 109 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0231 Vvi-Chr17 2379238 2381888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0231 110 766 Glycoside Hydrolase AT3G49170 33.797 1.29e-150 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0231 - - vri:117904415 1545.79