Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0228 ATGGACCCAGCACCACCCCCACCGCTCCCTCCACCACCGCCACCTCAACCTCCGGCAGCCTCCGAGGCACACGTAGCTCATGCCGCCAACCCTACCCCTAGCCACGGACCACCGCACAACCACCCGCCCTACGCCGAGATGATAACAACGGCAATTGGGGCTTTGAATGAGAGAACGGGGTCGAGTAAGAAAGCTATAGCGAAGTACATAGAAAGAACTTTCGGCGACTTGCCGCCGAGTCATCCGGCGTTGTTGACTCACCATCTAAAGAGATTGAGAAGCAGTGGTCAAGTTGTGATGGTGAAACACTCCTACATGCTCCCCAGATCTGGAGATGATGCTCACGCTCTCCCCCTTCATCCTGGGCCTGTCTCTGGGCCCAAGAGGGGTCGTGGCCGGCCCCCCAAGCCCAAGATCCCCGTCCAGCCCACTTCGGAGTCGGTGCTCGTGGCTGTGGGGTTGGTAGATGGGCCCGTGGTGCCGAAGAGGGGCCCTGGGCGTCCGCCTAAGTCTGGTGGTGTGCGTGGGCCGAGGCCCAAGTCGTTAGATGGACCCAAAAGGAGGCCTGGCCGTCCACCCAAGGCCCAGTTGGGTGGGGTGATTCCTGGCGGGGTGCCGAGGGAGCGGCCCAGGACGGCAGGTGTTACTAAGGTGAAGGTGTCCGGGAGGCCACGTGGTAGGCCGCCGAAGATTCTGACTGTTGGTGCCGGCGTCGGTGGAGGTCTCTCTGTGAAACGGCGGGGCCGGCCTCCTAAGGCTGACGGACCGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGGTGAGATCACTTTTCTCTTTCCCGCACTTTTGGCTATCCACACTGACTTTGAATTTGAATTGTTGTTTGGCTCTCCACAGTAGCTTTATCAAATTGATTTTGGCTCCTAGGAATAGGAAAACAACTTCCTAA 948 0.5918 MDPAPPPPLPPPPPPQPPAASEAHVAHAANPTPSHGPPHNHPPYAEMITTAIGALNERTGSSKKAIAKYIERTFGDLPPSHPALLTHHLKRLRSSGQVVMVKHSYMLPRSGDDAHALPLHPGPVSGPKRGRGRPPKPKIPVQPTSESVLVAVGLVDGPVVPKRGPGRPPKSGGVRGPRPKSLDGPKRRPGRPPKAQLGGVIPGGVPRERPRTAGVTKVKVSGRPRGRPPKILTVGAGVGGGLSVKRRGRPPKADGPKRPKKLTGRPVGRPRKVRSLFSFPHFWLSTLTLNLNCCLALHSSFIKLILAPRNRKTTS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0228 315 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 40 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g0228 315 MobiDBLite consensus disorder prediction 1 20 - -
Vvi17g0228 315 SMART h15plus2 38 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g0228 315 MobiDBLite consensus disorder prediction 111 145 - -
Vvi17g0228 315 MobiDBLite consensus disorder prediction 157 269 - -
Vvi17g0228 315 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vvi17g0228 315 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Vvi17g0228 315 SMART AT_hook_2 222 234 IPR017956 GO:0003677
Vvi17g0228 315 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Vvi17g0228 315 SMART AT_hook_2 244 256 IPR017956 GO:0003677
Vvi17g0228 315 SMART AT_hook_2 264 276 IPR017956 GO:0003677
Vvi17g0228 315 PANTHER HISTONE H1 13 230 - -
Vvi17g0228 315 CDD H15 41 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g0228 315 FunFam Histone H1.2 37 117 - -
Vvi17g0228 315 PRINTS AT-hook-like domain signature 128 138 IPR017956 GO:0003677
Vvi17g0228 315 PRINTS AT-hook-like domain signature 160 171 IPR017956 GO:0003677
Vvi17g0228 315 PRINTS AT-hook-like domain signature 220 230 IPR017956 GO:0003677
Vvi17g0228 315 MobiDBLite consensus disorder prediction 1 45 - -
Vvi17g0228 315 Pfam linker histone H1 and H5 family 41 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi17g0228 315 MobiDBLite consensus disorder prediction 247 261 - -
Vvi17g0228 315 SUPERFAMILY "Winged helix" DNA-binding domain 37 111 IPR036390 -
Vvi17g0228 315 Gene3D - 37 137 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0228 Vvi-Chr17 2350968 2352022 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0228 - - vvi:100853898 456.832