Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0223 ATGGCTGCAGATTCTTTCGATGATGAGTGTGATTACCTCTTCAAGGCTGTTCTAATTGGGGACTCTGCAGTTGGAAAATCTAATCTTCTGTCCAGATTCTCCCGGGATGAATTCCGATTAGATTCCAAGCCCACCATCGGAGTCGAATTCGCTTACCGGAATATTAAGGTCGGAGACAAGCTCATCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAACGGTTTAGAGCCATCACAAGCTCATATTATCGTGGAGCTCTTGGTGCCCTATTAGTATACGACATAACACGACGTGCGACGTTTGAAAATTTGAAAAAATGGTTACGTGAGCTGAGAGATTTTGGTAAACCTGACATGGTGATTGTTCTAGTTGGAAATAAATCGGATTTAGGTCATTCTCGAGAAGTTGATGAGGAAGAAGGAAAAACCCTAGCAGAAACGGAAGGCTTATGCTTCATGGAAACATCGGCTTTAGAGAATTTGAATGTGGAAGAGGCATTTCTTCATATGATTACTAAAATCCATGAAGTTACTAGTCAAAAAAACTTAGAAGCAAAGCTCAATGAACCGGTCAAACCTCTTATAATTGGGAAAGAAATAATTCATGTTGATCATGAAGTATCTGCGACTAAACAATCAAGTTGTTGCTCAAGATGA 657 0.4079 MAADSFDDECDYLFKAVLIGDSAVGKSNLLSRFSRDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITRRATFENLKKWLRELRDFGKPDMVIVLVGNKSDLGHSREVDEEEGKTLAETEGLCFMETSALENLNVEEAFLHMITKIHEVTSQKNLEAKLNEPVKPLIIGKEIIHVDHEVSATKQSSCCSR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0223 218 ProSiteProfiles small GTPase Ras family profile. 5 218 IPR001806 GO:0003924|GO:0005525
Vvi17g0223 218 FunFam ras-related protein RABA5a 6 216 - -
Vvi17g0223 218 PRINTS Transforming protein P21 ras signature 55 77 - -
Vvi17g0223 218 PRINTS Transforming protein P21 ras signature 37 53 - -
Vvi17g0223 218 PRINTS Transforming protein P21 ras signature 117 130 - -
Vvi17g0223 218 PRINTS Transforming protein P21 ras signature 14 35 - -
Vvi17g0223 218 PRINTS Transforming protein P21 ras signature 152 174 - -
Vvi17g0223 218 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Vvi17g0223 218 SMART ran_sub_2 19 217 - -
Vvi17g0223 218 Gene3D - 6 216 IPR027417 -
Vvi17g0223 218 NCBIfam small GTP-binding protein domain 13 167 IPR005225 GO:0005525
Vvi17g0223 218 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Vvi17g0223 218 SMART rab_sub_5 14 177 - -
Vvi17g0223 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 185 IPR027417 -
Vvi17g0223 218 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Vvi17g0223 218 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Vvi17g0223 218 PANTHER DRAB11-RELATED 7 197 - -
Vvi17g0223 218 CDD Rab11_like 11 175 - -
Vvi17g0223 218 SMART ras_sub_4 11 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0223 Vvi-Chr17 2282170 2286444 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0223 K07976 - vvi:100242285 434.106