Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0221 ATGACGAGCAATTCTATTTCTGAATCCACCAAGCCCAATATCTATCCTCAGGATAAGGATGAATTGCAGAAGGTCTTCAACCGCTTCGACGCCAACGGCGACGGCAAGATCTCCAGCTCCGAGCTCGCCAACGTGCTGCGGGCCCTCGGATCTGAGTCGTCGCCCGAGGAGATGAGCCGTAAGATGATCGGATCTTTTGACTCCGACGGGGACGGCAATATTAGCTTTGACGAGTTCAAGGAGATGATGACCAAATCCAGCCCTAAACAGCGTCAACAGTGA 282 0.5248 MTSNSISESTKPNIYPQDKDELQKVFNRFDANGDGKISSSELANVLRALGSESSPEEMSRKMIGSFDSDGDGNISFDEFKEMMTKSSPKQRQQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0221 93 ProSitePatterns EF-hand calcium-binding domain. 30 42 IPR018247 -
Vvi17g0221 93 Gene3D - 2 93 - -
Vvi17g0221 93 ProSiteProfiles EF-hand calcium-binding domain profile. 17 52 IPR002048 GO:0005509
Vvi17g0221 93 MobiDBLite consensus disorder prediction 50 93 - -
Vvi17g0221 93 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 21 84 - -
Vvi17g0221 93 SMART efh_1 21 49 IPR002048 GO:0005509
Vvi17g0221 93 SMART efh_1 58 86 IPR002048 GO:0005509
Vvi17g0221 93 Pfam EF-hand domain pair 20 84 IPR002048 GO:0005509
Vvi17g0221 93 FunFam Calmodulin-2 A 13 92 - -
Vvi17g0221 93 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Vvi17g0221 93 SUPERFAMILY EF-hand 18 83 IPR011992 -
Vvi17g0221 93 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Vvi17g0221 93 CDD EFh 21 84 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0221 Vvi-Chr17 2264238 2264729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0221 21 89 EF-hand Containing Proteins AT1G73630 49.275 2.51e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0221 K13448 - vvi:100264572 131.724