Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0220 ATGGGGATGCTGCTCAGGTCCCTGCTTCTCAGTCTCGTCTGCACCTGCATTGCGGGTGAAGTATCGGCCACAACAATTTCACTATACAACAAATGCTCACATCCAGTGTGGCCAGGCATACAACCAGGCGCAGGCAAGCCCATCCTTGCCCGTGGAGGCTTCAAGCTCCCACCCAACAAGGCCTACTCCCTCCACATCCCAGCGGCCTGGTCCGGCCGCATCTGGGGCCGTCACGGATGCTCCTTCGACGCCCACGGCCGGGGCCGCTGCGCTACCGGCGACTGCGGCGGCTCCCTTTTCTGCAACGGCATGGGCGGCACACCTCCGGCCACCCTCGCCGAGATCACCCTGGGTTCGGAGCAAGATTTCTACGACGTGAGCCTCGTCGACGGTTACAACCTGGCCATCTCCATCACCCCCTTCAAAGGGTCAGGCAAGTGTAGCTACGCGGGATGTGTGAGCGACCTCAACACCATGTGTCCGGTGGGTCTCCAGGTGAGATCCCACGACAACAGGCGGGTGGTGGCCTGCAAGAGCGCATGCTCTGCCTTCAACTCGCCCCGCTACTGCTGCACTGGAAGCTTTGGGAGTCCGCAGTCCTGCAAGCCCACCGCCTACTCCAAGATCTTCAAAGCCGCATGTCCAAGAGCTTATTCCTATGCTTATGATGATCCAACTAGCATTGCCACTTGCACTGGTGGCAACTATTTGGTCACTTTCTGCCCTCACCACTAG 735 0.5973 MGMLLRSLLLSLVCTCIAGEVSATTISLYNKCSHPVWPGIQPGAGKPILARGGFKLPPNKAYSLHIPAAWSGRIWGRHGCSFDAHGRGRCATGDCGGSLFCNGMGGTPPATLAEITLGSEQDFYDVSLVDGYNLAISITPFKGSGKCSYAGCVSDLNTMCPVGLQVRSHDNRRVVACKSACSAFNSPRYCCTGSFGSPQSCKPTAYSKIFKAACPRAYSYAYDDPTSIATCTGGNYLVTFCPHH* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0220 244 FunFam Thaumatin-like protein 1a 24 242 - -
Vvi17g0220 244 PIRSF PR5 1 244 IPR001938 -
Vvi17g0220 244 SUPERFAMILY Osmotin, thaumatin-like protein 24 243 IPR037176 -
Vvi17g0220 244 Gene3D Thaumatin 24 242 IPR037176 -
Vvi17g0220 244 ProSiteProfiles Thaumatin family profile. 23 244 IPR001938 -
Vvi17g0220 244 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Vvi17g0220 244 PANTHER OS03G0233200 PROTEIN 13 242 IPR001938 -
Vvi17g0220 244 SMART tha2 26 242 IPR001938 -
Vvi17g0220 244 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vvi17g0220 244 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Vvi17g0220 244 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vvi17g0220 244 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Vvi17g0220 244 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Vvi17g0220 244 CDD TLP-PA 25 241 - -
Vvi17g0220 244 Pfam Thaumatin family 30 242 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0220 Vvi-Chr17 2254360 2255331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0220 7 243 Receptor kinase-like Gene Family AT5G38280 43.443 1.40e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0220 - - vvi:100261232 516.924