Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0218 ATGCGTGAGATTCTTCACATTCAGGGAGGGCAATGTGGGAACCAAATTGGATCAAAGTTCTGGGAAGTTGTATGTGATGAACATGGCATTGATCCCACCGGCCGGTACACCGGAAATTCTGATTTGCAGCTGGAGAGAGTCAATGTGTACTATAATGAGGCCGGTGGCGGCCGGTTTGTGCCGCGGGCGGTGCTCATGGACCTTGAGCCAGGCACCATGGACAGCATCCGGACTGGTCCCTTTGGCCAAATTTTCCGGCCGGATAACTTTGTTTTTGGGCAGTCTGGTGCCGGAAACAATTGGGCGAAGGGACACTACACGGAAGGCGCAGAGCTTATTGATTCGGTCCTTGATGTTGTGAGGAAGGAGGTTGAGAATTGTGACTGTTTGCAAGGATTTCAAGTATGTCATTCTCTTGGAGGTGGAACGGGGTCTGGAATGGGAACTCTGCTCATTTCAAAGATCCGAGAAGAGTACCCAGATAGGATGATGCTTACATTTTCAGTCTTCCCGTCTCCAAAGGTATCCGACACAGTTGTAGAGCCTTACAATGCAACGCTTTCTGTTCATCAGCTGGTGGAGAATGCCGATGAGTGTATGGTGCTTGACAATGAAGCACTCTATGATATCTGCTTCAGAACTCTCAAGCTCGCCACCCCAAGTTTTGGGGACTTGAATCATCTGATCTCTGCAACAATGAGTGGAGTAACTTGCTGCTTGAGGTTTCCGGGCCAGCTGAACTCAGACCTTCGAAAGCTAGCCGTGAACTTAATCCCATTCCCTCGACTTCACTTCTTCATGGTGGGGTTTGCTCCTTTGACCTCCCGCGGATCGCAGCAGTACCGGGCACTGACTGTCCCTGAGCTGACGCAACAAATGTGGGATGCCAAGAACATGATGTGCGCAGCTGATCCACGGCACGGCCGTTACCTCACAGCATCGGCCATGTTTAGAGGCAAAATGAGCACGAAAGAAGTGGATGAACAGATAATAAATGTGCAGAACAAAAACTCTTCCTACTTCGTGGAGTGGATCCCAAACAATGTCAAGTCTAGTGTCTGTGACATCCCTCCAAAAGGGCTCTCAATGGCTTCGACTTTCATTGGGAATTCGACCTCTATACAGGAGATGTTCCGGAGAGTAAGCGAGCAGTTTACAGCCATGTTTAGGAGGAAGGCCTTCTTGCACTGGTATACCGGAGAAGGAATGGATGAGATGGAGTTTACTGAAGCGGAGAGTAACATGAATGACCTTGTTGCTGAGTACCAACAGTACCAGGATGCTACAGCTGATGATGAGGGTGATTATGAAGACGATGATGGGGACACTGAGAGCTGA 1338 0.494 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEAGGGRFVPRAVLMDLEPGTMDSIRTGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEVENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDEGDYEDDDGDTES* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0218 445 Gene3D Helix hairpin bin 374 444 IPR023123 -
Vvi17g0218 445 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 329 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 347 370 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 311 329 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 377 388 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Beta-tubulin signature 412 430 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 FunFam Tubulin beta chain 374 435 - -
Vvi17g0218 445 SMART Tubulin_C_4 246 383 IPR018316 -
Vvi17g0218 445 MobiDBLite consensus disorder prediction 428 445 - -
Vvi17g0218 445 SUPERFAMILY Tubulin C-terminal domain-like 244 429 IPR008280 -
Vvi17g0218 445 Pfam Tubulin C-terminal domain 261 382 IPR018316 -
Vvi17g0218 445 MobiDBLite consensus disorder prediction 424 445 - -
Vvi17g0218 445 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Vvi17g0218 445 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Vvi17g0218 445 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Vvi17g0218 445 FunFam Tubulin beta chain 264 373 - -
Vvi17g0218 445 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 370 398 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 PANTHER TUBULIN 3 427 IPR000217 GO:0005874|GO:0007017
Vvi17g0218 445 Gene3D - 263 373 IPR037103 -
Vvi17g0218 445 FunFam Tubulin beta chain 1 262 - -
Vvi17g0218 445 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Vvi17g0218 445 Gene3D Tubulin/FtsZ, GTPase domain 1 262 IPR036525 -
Vvi17g0218 445 Coils Coil 408 428 - -
Vvi17g0218 445 CDD beta_tubulin 2 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0218 Vvi-Chr17 2199755 2201824 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0218 K07375 - vvi:100259401 869.381