Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0215 ATGATTAGTTTATTAGACTTCTACCATGTCATGACTGCAGTGGTTCCACTCTACGTGGCCATGATCTTAGCTTATGGGTCGGTGAAATGGTGGAAGATCTTCACTCCAGACCAGTGCTCCGGTATAAACCGATTTGTTGCTCTCTTTGCTGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACGATCCTTATGCCATGAACTTCAGATTCATAGCTGCAGATACCCTTCAGAAGATTATAGTCTTGGCAGTGTTAGCTGTGTGGAGTAATGTGAGCAAAAGGGGTTGCCTAGAATGGACTATAACACTCTTCTCTCTTTCCACGCTTCCAAACACTCTGGTGATGGGCATTCCTTTACTGAAAGGAATGTATGGAGAGTATTCTGGTAGCTTAATGGTCCAAATTGTTGTACTTCAGTGCATCATATGGTACACTTTGATGTTATTTCTGTTTGAATATAGAGGTGCAAAGATGCTCATCTCTGAGCAGTTCCCAGATACTGCTGGCTCGATTGTGTCCATCCATGTGGATTCTGATATCATGTCATTGGATGGAAGGCAAGCCTTGGAAACTGAGGCTGAAATTAAGGAGGATGGGAAGCTTCATGTCACTGTGAGAAAATCAAATGCTTCAAGATCAGATATATTCTCCAGAAGGTCACAGGGGTTGTCGTCTACCACTCCACGGCCATCGAATCTAACAAATGCAGAGATATACTCGTTACAGTCCTCACGAAACCCAACTCCAAGAGGGTCCAGTTTCAATCACACTGATTTCTACTCAATGGTAGCGGGTGGGCGCAATTCAAACTTTGGTTCATCTGACGTGTACGGCCTGACCACTTCGAGAGGCCCAACGCCGAGGCCTTCCAATTATGAAGAAGATGGTAACAACAACAACAAGATCAGATTTCACTACCACGCTCAGGGTGGTAACCATTACCCGGCACCCAACCCAGGCATGTTTTCGCCGACTGGGTCCAAAAATGTTGCTTCTGCTGCTGCTGCTAAGAAGCCTAATGGCCAAGCTCAGCAGAAGCCAGACGAAGGAACTAGGGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCTCCTGTTTCAGATGTGTTTGGGGGCCATGAATACGGAGCCAATGATCAGAACGTGAAAGAGAGAGTGGCAGTGTCTCCCGGAAAAGTGGAGGGTCACAGAGAGAATCAAGAAGATTACTTGGAGAGAGACGATTTCAGCTTTGGAAACAGGGTGTTAGCCCAAGAGATGAACAACCACGAAGGTGAAAAAGTGGGAGATGGAAAAGCCAAAGCCATGCCTCCAGCTAGCGTCATGACTAGACTCATCCTGATAATGGTTTGGAGAAAGCTCATCAGAAACCCCAACACTTACTCAAGCTTAATAGGCCTTATTTGGTCTCTAGTTTCATTCAAGTGGAAAGTTCAGATGCCTGCTATTATAGAAAAGTCCATTGCCATACTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTAGGTCTGTTCATGGCTTTGCAACCAAGGATCATAGCATGTGGAAATTCCATAGCAGTTTTTGCCATGGCCGTGAGATTCCTTACAGGCCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGGCTTCGCGGAGTCCTCCTGCGCGTTGCCATTGTCCAGGCAGCTTTACCCCAAGGAATCGTGCCCTTTGTCTTTGCTAAAGAATACAATGTACACCCTGATATTCTCAGCACAGGAGTCATATTTGGGATGTTAATTGCATTGCCCATTACACTTGTCTACTACATTTTACTGGGAATATGA 1815 0.4584 MISLLDFYHVMTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIVLAVLAVWSNVSKRGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGEYSGSLMVQIVVLQCIIWYTLMLFLFEYRGAKMLISEQFPDTAGSIVSIHVDSDIMSLDGRQALETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVAGGRNSNFGSSDVYGLTTSRGPTPRPSNYEEDGNNNNKIRFHYHAQGGNHYPAPNPGMFSPTGSKNVASAAAAKKPNGQAQQKPDEGTRDLHMFVWSSSASPVSDVFGGHEYGANDQNVKERVAVSPGKVEGHRENQEDYLERDDFSFGNRVLAQEMNNHEGEKVGDGKAKAMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFKWKVQMPAIIEKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNSIAVFAMAVRFLTGPAVMAAASIAVGLRGVLLRVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGI* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0215 604 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 603 - -
Vvi17g0215 604 NCBIfam auxin efflux carrier 1 603 IPR014024 -
Vvi17g0215 604 MobiDBLite consensus disorder prediction 213 235 - -
Vvi17g0215 604 MobiDBLite consensus disorder prediction 275 300 - -
Vvi17g0215 604 MobiDBLite consensus disorder prediction 313 350 - -
Vvi17g0215 604 Pfam Membrane transport protein 9 599 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0215 Vvi-Chr17 2149279 2152109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0215 1 595 Organic Solute Cotransporters AT1G73590 72.320 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0215 K13947 - vvi:100249181 1194.1