Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0213 ATGGCTTCGTCATCTGCGAATCTGTGGGTTTTGTTGGGATTGGGATTGGCTGGCGTATTGTTGATGACCAGAAAGCTTAAGAAAACCATCAGAGAAGATTTTGGCGCATTCGTCCAACGTCTTCAGCTTCTCCCTCCGCCCCAGCCCGCTCCTCCCAAAGCTCCTCATCCCCTCACCAACCTCTCCTTCGCCGTCTCAGACGTATTTGACATTGAAGGATATGTGACTGGGTTTGGCAATCCAGACTGGGCCAGGACTCATGACACAGCTTCTAGGACCTCTCCTGTGGTTTCAGCTCTTGTTGAAGGAGGTGCCACATGCACTGGGAAAACTGTTGTGGATGAAATGGCATATAGTATCAATGGAGAAAATAAGCATTATGGTACACCCACCAATCCTGCTGCTCCTTCACGGATACCAGGAGGATCCTCCAGTGGAGCTGCTGTGGCCGTAGCTGCAAATTTTGTTGATTTCTCTTTAGGCCTCGATACTGTTGGTGGCGTGAGAGTACCTGCTGCATTTTGTGGTGTTATAGGATTCCGGCCCTCACATGGGGCGGTTTCTCACATGGGGATCATTCATGTTTCATCGAGTCTTGATACTGTTGGATGGTTTGCTAAGGATCCTAGTATACTTCGTCGTGTTGGCCATGTGCTACTGCAACTTACATATGCTGTTCAACGTAGTCCTAGACAAATTATATTTGCTGATGACTGTTTCCAATCACTAAGGATTCCTGTTGACAGGGTTTATCAGGTGGTGCTTAAATCAACTGAGAAGCTGTTTGGAAGACAAGTTCTGAAGCGTGAAAATCTTGAGAACTACTTAGATTCTAAAGTTCCAAGCTTGAAAGCATTTCATAGCCAGAAAACAAATGGTGAAACCAGAAATTCTTTGATAAGATCTCTTGTAAAAATTATGCATTGTCTTCAAAGGCATGAGTTCAAGCATAATCATGAAGAATGGATCAATTCAGTGAAGCCTATCCTTGATGCTTCTATTTCATCACAATTACATGATGTATTGGAGGTGGCAGATACTGAGATTGAAAACTGTCAATCATCCAGGATGGAAATACGTTCTGCTCTTAACTCTCTTTTGAAGGATGATGGAATTCTGGTGATCCCTACTGTTGCTGACCCTCCCCCAAAACTTGGTGGGAAGGAGAGTTTGTCAGAGGAATACCAGAACCGTACTCTTGGTCTGTTGAGTATTGCTAGTATGTCAGGTTGCTGTCAGGTCACAGTACCATTGGGACTTTATGACAAGTATCCTGTTTCAGTATCTTTCATGGCTAGACATGGGGGTGATCGCTTTTTACTAGATACAGTGCAGACCATGTATGCATCTCTTCAGGAGCAGGCTGACATTGCTGCAAAGTCCAAACTATCAAGTAATGCTGTTGACCGGGAAACATCTGCTGAAATTGCTAAAGAAAAGGGTAATCAAGCATTCAAAGATAAACAGTGGCAGAAGGCTGTTGGCTTCTATACAGAAGCCATTAAACTTAGTGGCAATAATGCAACATACTACAGCAATAGAGCTGCAGCATATCTGGAAATGGGAAGTTTCCTCCAAGCTGAGGCTGATTGTACAGAAGCAATCAATCTTGATAAAAAGAATGTGAAGGCCTACTTAAGGAGAGGCACGGCAAGAGAGATGCTTGGCTATTATAAGGATGCAATTGAAGATTTCAGATACGCACTTGTTCTTGAGCCAACCAATAAAAGAGCATCCCTTTCTGCTGACAGACTAAAGAAGTTATTTCAGTAA 1773 0.4365 MASSSANLWVLLGLGLAGVLLMTRKLKKTIREDFGAFVQRLQLLPPPQPAPPKAPHPLTNLSFAVSDVFDIEGYVTGFGNPDWARTHDTASRTSPVVSALVEGGATCTGKTVVDEMAYSINGENKHYGTPTNPAAPSRIPGGSSSGAAVAVAANFVDFSLGLDTVGGVRVPAAFCGVIGFRPSHGAVSHMGIIHVSSSLDTVGWFAKDPSILRRVGHVLLQLTYAVQRSPRQIIFADDCFQSLRIPVDRVYQVVLKSTEKLFGRQVLKRENLENYLDSKVPSLKAFHSQKTNGETRNSLIRSLVKIMHCLQRHEFKHNHEEWINSVKPILDASISSQLHDVLEVADTEIENCQSSRMEIRSALNSLLKDDGILVIPTVADPPPKLGGKESLSEEYQNRTLGLLSIASMSGCCQVTVPLGLYDKYPVSVSFMARHGGDRFLLDTVQTMYASLQEQADIAAKSKLSSNAVDRETSAEIAKEKGNQAFKDKQWQKAVGFYTEAIKLSGNNATYYSNRAAAYLEMGSFLQAEADCTEAINLDKKNVKAYLRRGTAREMLGYYKDAIEDFRYALVLEPTNKRASLSADRLKKLFQ* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0213 590 SMART tpr_5 542 575 IPR019734 GO:0005515
Vvi17g0213 590 SMART tpr_5 474 507 IPR019734 GO:0005515
Vvi17g0213 590 SMART tpr_5 508 541 IPR019734 GO:0005515
Vvi17g0213 590 Pfam Amidase 55 441 IPR023631 -
Vvi17g0213 590 ProSiteProfiles TPR repeat profile. 542 575 IPR019734 GO:0005515
Vvi17g0213 590 SUPERFAMILY Amidase signature (AS) enzymes 17 447 IPR036928 -
Vvi17g0213 590 Gene3D Amidase signature (AS) domain 45 451 IPR036928 -
Vvi17g0213 590 FunFam Outer envelope protein 64, mitochondrial 44 451 - -
Vvi17g0213 590 SUPERFAMILY TPR-like 473 579 IPR011990 GO:0005515
Vvi17g0213 590 Gene3D Tetratricopeptide repeat domain 458 573 IPR011990 GO:0005515
Vvi17g0213 590 PANTHER AMIDASE 1 3 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0213 Vvi-Chr17 2109434 2134121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0213 33 449 Acyl Lipid Metabolism Gene Families AT1G08980 50.594 1.81e-145 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0213 - - vvi:100244007 1112.06